PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G180300.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 390aa    MW: 44047 Da    PI: 6.5149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G180300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-12197248155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N+ ++ Lr+ +P++   + ++ + a+i   A++++k+L+
  Potri.002G180300.2 197 QRMNHIAVERKRRRLMNDHLNSLRSFMPPS---YVQRGDQASIIGGAIDFVKELE 248
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-16187262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-12195252No hitNo description
PROSITE profilePS5088814.723196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9197248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-13197260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-9202253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MERLEGPINP CFLGEHNLDL ECLDQGFINT ESLRFGEERP YFSSPIFDEK MPFLQMLQTV  60
ETPPTFPFKE PCFQTLLKLQ HLKKPWNMNN YYMPETESQV QPPELESCVT HDIFDLHSPV  120
KSETRELPNP HSNSCLGGVS PEPAEPYSGS LIPLGTQPQT VPNIKTQFSK STTIITRERR  180
KRKRTRPTKN KEEVESQRMN HIAVERKRRR LMNDHLNSLR SFMPPSYVQR GDQASIIGGA  240
IDFVKELEQL LQSLEAQKRM KEIEAGSTIG ISSNQYFTSP PQSDNLAEKG GKCEEKRTVK  300
KKSEAAEIEV TAVQNHVNLK IKCQRSLGQL ARAIVALEEL SLTVLHLNIS SSQATILYSF  360
NLKLEDDCEL GSTDEVAAAV HQIFSSFNG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183RRKRKR
2205209RKRRR
3206210KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.88370.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G180300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450770.10.0transcription factor bHLH67 isoform X2
TrEMBLA0A2K2BKJ00.0A0A2K2BKJ0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10190.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-72bHLH family protein