PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G180300.5
Common NamePOPTR_0002s18100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 281aa    MW: 31929.5 Da    PI: 8.9494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G180300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-1288139155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N+ ++ Lr+ +P++   + ++ + a+i   A++++k+L+
  Potri.002G180300.5  88 QRMNHIAVERKRRRLMNDHLNSLRSFMPPS---YVQRGDQASIIGGAIDFVKELE 139
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1678153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.62E-1286143No hitNo description
PROSITE profilePS5088814.72387138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-1088139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1388151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-993144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MPFLQMLQTV ETPPTFPFKE PCFQTLLKLQ HLKKPWNMNN YYMPETESQV QPPELESCFS  60
KSTTIITRER RKRKRTRPTK NKEEVESQRM NHIAVERKRR RLMNDHLNSL RSFMPPSYVQ  120
RGDQASIIGG AIDFVKELEQ LLQSLEAQKR MKEIEAGSTI GISSNQYFTS PPQSDNLAEK  180
GGKCEEKRTV KKKSEAAEIE VTAVQNHVNL KIKCQRSLGQ LARAIVALEE LSLTVLHLNI  240
SSSQATILYS FNLKLEDDCE LGSTDEVAAA VHQIFSSFNG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974RRKRKR
296100RKRRR
397101KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.88370.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G180300.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450771.11e-176transcription factor bHLH70 isoform X3
SwissprotO810371e-76BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A2K2BKL11e-175A0A2K2BKL1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]