PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G181900.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 207aa    MW: 24122.3 Da    PI: 9.5788
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G181900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.88.3e-4031342128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         p+G+rFhPt+ee++++yLk+k++g++  ++++i evd+y+ +Pw+Lp  ++ k++++ wy+F++ d k++++kr++r tk+g+Wk+tgk +
  Potri.002G181900.3   3 PVGYRFHPTEEEIICYYLKHKMNGRNSLVDDHIGEVDLYRRDPWELPvsARKKSDDRVWYYFCRLDYKHSNSKRASRETKNGFWKSTGKVR 93 
                         89************************999999***************5336667888********************************** PP

                 NAM  91 evlsk.kgelvglkktLvfy.kg.rapkgektdWvmheyrl 128
                         ++++k ++e++g k+tLvf  +  +++k + t+Wv+he+++
  Potri.002G181900.3  94 DIKAKrTNEVIGSKRTLVFQyRCpDSKKVVGTSWVIHEFHA 134
                         ***9867788*********733347777789********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.4532152IPR003441NAC domain
PfamPF023655.4E-233133IPR003441NAC domain
SuperFamilySSF1019415.62E-423152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAPVGYRFHP TEEEIICYYL KHKMNGRNSL VDDHIGEVDL YRRDPWELPV SARKKSDDRV  60
WYYFCRLDYK HSNSKRASRE TKNGFWKSTG KVRDIKAKRT NEVIGSKRTL VFQYRCPDSK  120
KVVGTSWVIH EFHAKTTTPD QRALVLCKLK HKADDSAANL PDDEGEPIRV MGSNVENNAV  180
LNNNQEVRWS ISYSNFYNIV FHVKHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-23313216138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G181900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451227.11e-138protein CUP-SHAPED COTYLEDON 3 isoform X3
TrEMBLA0A3N7EJH71e-137A0A3N7EJH7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18280.11e-137(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-38NAC transcription factor-like 9