PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G182300.1

Common Name

POPTR_0002s18310g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 249aa MW: 28521.8 Da PI: 6.6025

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G182300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.6	1.6e-42	12	140	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p+G+ F+Ptdeelv++yL+ k++g ++ ++i+ev+++++ePw Lp +++++++ e yfF++r+ ky +++++nr+t +gyWk tgk++ Potri.002G182300.1 12 PVGYVFRPTDEELVNHYLRLKMHGGYEQEVSIIAEVNVCDFEPWVLPglSTYQSNDPESYFFCPRSYKYVNSHQANRTTVAGYWKVTGKNR 102 89*********************9888899***********6336667778****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +++k ++e++ +kktLvfy++r p+g+ktdWv+hey+ Potri.002G182300.1 103 IIKAKsTKEHIATKKTLVFYENRVPNGVKTDWVIHEYH 140 99877788***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-47	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	45.415	11	159	IPR003441	NAC domain
Pfam	PF02365	1.6E-23	12	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTNRALSFPS SPVGYVFRPT DEELVNHYLR LKMHGGYEQE VSIIAEVNVC DFEPWVLPGL 60 STYQSNDPES YFFCPRSYKY VNSHQANRTT VAGYWKVTGK NRIIKAKSTK EHIATKKTLV 120 FYENRVPNGV KTDWVIHEYH PTFSFHNQRD FVLCKLKKHP DENMPTFEES ESSSNVPYGF 180 GNQNPTVRNY PLILEEGGHT AQMASNLANN RLEEEINQLR TQLESFRGFD DGDFGLNSAL 240 QFSPGNYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	10	158	16	164	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	10	158	16	164	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	10	158	16	164	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	10	158	16	164	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	10	159	19	168	NAC domain-containing protein 19
3swm_B	1e-32	10	159	19	168	NAC domain-containing protein 19
3swm_C	1e-32	10	159	19	168	NAC domain-containing protein 19
3swm_D	1e-32	10	159	19	168	NAC domain-containing protein 19
3swp_A	1e-32	10	159	19	168	NAC domain-containing protein 19
3swp_B	1e-32	10	159	19	168	NAC domain-containing protein 19
3swp_C	1e-32	10	159	19	168	NAC domain-containing protein 19
3swp_D	1e-32	10	159	19	168	NAC domain-containing protein 19
4dul_A	1e-32	10	158	16	164	NAC domain-containing protein 19
4dul_B	1e-32	10	158	16	164	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269\|PubMed:18443413}.
Uniprot	TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:18443413}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G182300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302682.1	0.0	protein NTM1-like 9
Swissprot	F4JN35	5e-54	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	B9GRS9	0.0	B9GRS9_POPTR; Uncharacterized protein
STRING	POPTR_0002s18310.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86
Representative plant	OGRP9281	3	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	2e-56	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Potri.002G182300.1
Entrez Gene	7487751

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]