PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G199200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 189aa    MW: 20949.8 Da    PI: 9.3688
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G199200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144668123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F ++  L  H++ H
  Potri.002G199200.1 46 FECHFCHRAFANSQALGGHQNAH 68
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-64373No hitNo description
Gene3DG3DSA:3.30.160.603.0E-44472IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7184673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAECSTPFQQ SDQKTTSKLK LFGFPLTEQD DEILSKTENS LENRKFECHF CHRAFANSQA  60
LGGHQNAHKR ERQRARRNHY LRDRRFMAAA PVVCSHAVKL PPSRLIISNN ITAAAAKFRP  120
QLASDYPSQP LLFLPSSPDH HFPSRIYIAQ PLHAAASAPS FIQALPGKLC SKDDDVGVDL  180
CLKLTPSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G199200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301496.31e-126zinc finger protein 6
TrEMBLA0A2K2BLN11e-136A0A2K2BLN1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20020.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.14e-14C2H2 family protein