PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G199800.1
Common NamePOPTR_0002s20080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 148aa    MW: 16627.2 Da    PI: 9.683
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G199800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.43.5e-173064135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+tt Tp+WR gp g++tLCnaCG+++rk+++
  Potri.002G199800.1 30 CTDCQTTRTPCWRGGPAGPRTLCNACGIRQRKRRR 64
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.3E-142485IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.8862460IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-122564No hitNo description
Gene3DG3DSA:3.30.50.102.5E-132763IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.57E-122964No hitNo description
PfamPF003209.8E-153064IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403055IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MIMDLRTKGP ESEDMDNTHP SKCNEIKRRC TDCQTTRTPC WRGGPAGPRT LCNACGIRQR  60
KRRRALLGLD KGGPERSREK MAKGSNSSKL GVSLNLDLMG FKRDGMFQED WKRKLGEEEQ  120
AAILLMALSC GSVCAWYKKD EGKHFYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G199800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482470.0EF148247.1 Populus trichocarpa x Populus deltoides clone WS01312_C13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302743.21e-106GATA transcription factor 16
TrEMBLB9GSF01e-104B9GSF0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20080.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-34GATA transcription factor 16