PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G223700.2
Common NamePOPTR_0002s21790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 317aa    MW: 33877 Da    PI: 8.1556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G223700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-11629427
                        ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                        + C++++rt  Ck+G  CkF+H++
  Potri.002G223700.2  6 KSCPYYMRTRSCKFGVACKFHHPQ 29
                        66********************97 PP
2zf-CCCH35.32e-11153178227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Cr+f+ +GtCkyG+ Ck++H++
  Potri.002G223700.2 153 DQPECRHFMSSGTCKYGSDCKYHHPK 178
                         689*********************96 PP
3zf-CCCH32.61.3e-10198223126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C++++ +G+Ck+G++C++ H+
  Potri.002G223700.2 198 PGQAVCPDYSMYGICKFGPTCRYDHP 223
                         57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.962230IPR000571Zinc finger, CCCH-type
SMARTSM003560.029429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5430IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9529IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4728IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.399151179IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9153178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7154180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5157178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6196223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037197225IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7197224IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-8199223IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRQDEKSCPY YMRTRSCKFG VACKFHHPQP ASLGTSLPLT GAAAFGSTGS PIVPSSGLPY  60
VGGLPTWSLP RAPPYMSGTH LQGPQAYMPV VVSPSQGIVP VPGWNTYVGN SNPMSSSSIL  120
GSNRAYDSRN HGDSGSSGHL LSTAIPALPE RPDQPECRHF MSSGTCKYGS DCKYHHPKER  180
IAQLATNTMG PFGLPLRPGQ AVCPDYSMYG ICKFGPTCRY DHPLPTYPYN YSLSLPSLSM  240
MDSSLVTYPR MAQAALSSAT PVSLSKLPDL IRNPDGASYN KHQNSDSNTK TLDDPTEHAG  300
SPPPHSSQAS SEPSHD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G223700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302855.10.0zinc finger CCCH domain-containing protein 3
TrEMBLA0A3N7G0980.0A0A3N7G098_POPTR; Uncharacterized protein
TrEMBLB9GTS90.0B9GTS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21790.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.28e-53C3H family protein