PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G231700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 346aa    MW: 36957.8 Da    PI: 7.5249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G231700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-10278323655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri  ++ +L++l+P+     +k  s a++L  Av++Ik Lq
  Potri.002G231700.1 278 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDFAVQHIKGLQ 323
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.618272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14275337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-10276327No hitNo description
Gene3DG3DSA:4.10.280.101.6E-13277335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-8278323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-12278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MYQQPSSSSS SPQKPTVPSG LTRYGSAPGS FLTRAVDSVI GVDRELSGLG STSLVGSRQY  60
FSGDSPSVTS ESTCKVNPSS CDPKAPKSGG SSGSLQRSYG FNEVAHGAGS LVRQRSSPAG  120
FLSHLATENG GFSITRESGG YNAHSGPGGG HSVSRLKPQL SFTRQESLSQ ISEVSENVVE  180
GIGSDNNHQN CTHSYSAAGF GMESWDNPNS IVFSGPPSKQ ARNGDGDIYS CFNGLETQFS  240
LPQTSLEIET VEKLLHVPED SVPCKIRAKR GFATHPRSIA ERERRTRISG KLKKLQDLVP  300
NMDKQTSYAD MLDFAVQHIK GLQNEVEKLH KEMENCTCGC EKSTP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.91410.0bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G231700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451325.10.0transcription factor bHLH128
SwissprotQ8H1025e-91BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2K2BN680.0A0A2K2BN68_POPTR; BHLH family protein
STRINGcassava4.1_010829m1e-176(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]