PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G231700.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 342aa    MW: 36523.4 Da    PI: 7.5249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G231700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10274319655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri  ++ +L++l+P+     +k  s a++L  Av++Ik Lq
  Potri.002G231700.2 274 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDFAVQHIKGLQ 319
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.618268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-14271333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-10272323No hitNo description
Gene3DG3DSA:4.10.280.101.6E-13273331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-8274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-12274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MYQQPSSSSS SPQKPTVPSG LTRYGSAPGS FLTRAVDSVI GVDRELSGLG STSLVGSRQY  60
FSGDSPSVTS ESTCKVNPSS CDPKAPKSGG SSGSLQRSYG FNEVAHGAGS LVRQRSSPAG  120
FLSHLATENG GFSITRESGG YNAHSGPGGG HSVSRLKPQL SFTRQESLSQ ISEVSENVVE  180
GIGSDNNHQN CTHSYSAAGF GMESWDNPNS IVFSGPPSKQ ARNGDGDIYS CFNGLETQVL  240
NLEIETVEKL LHVPEDSVPC KIRAKRGFAT HPRSIAERER RTRISGKLKK LQDLVPNMDK  300
QTSYADMLDF AVQHIKGLQN EVEKLHKEME NCTCGCEKST P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.91410.0bud| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G231700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042788.10.0PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1026e-89BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A2K2BN680.0A0A2K2BN68_POPTR; BHLH family protein
STRINGcassava4.1_010829m1e-169(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]