PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G231700.3

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 320aa MW: 34210.9 Da PI: 8.4727

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G231700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.6e-06	278	301	6	29
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri ++ +L++l+P+ Potri.002G231700.3 278 SIAERERRTRISGKLKKLQDLVPN 301 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.556	272	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.34E-5	275	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-4	276	307	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.7E-5	277	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MYQQPSSSSS SPQKPTVPSG LTRYGSAPGS FLTRAVDSVI GVDRELSGLG STSLVGSRQY 60 FSGDSPSVTS ESTCKVNPSS CDPKAPKSGG SSGSLQRSYG FNEVAHGAGS LVRQRSSPAG 120 FLSHLATENG GFSITRESGG YNAHSGPGGG HSVSRLKPQL SFTRQESLSQ ISEVSENVVE 180 GIGSDNNHQN CTHSYSAAGF GMESWDNPNS IVFSGPPSKQ ARNGDGDIYS CFNGLETQFS 240 LPQTSLEIET VEKLLHVPED SVPCKIRAKR GFATHPRSIA ERERRTRISG KLKKLQDLVP 300 NMDKVIMWYS FLHTSWNLL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.9141	0.0	bud\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G231700.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024451325.1	0.0	transcription factor bHLH128
Swissprot	Q8H102	2e-67	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2K2BN68	0.0	A0A2K2BN68_POPTR; BHLH family protein
STRING	cassava4.1_010829m	1e-148	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	6e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.002G231700.3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]