PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G239300.1

Common Name

POPTR_0002s24030g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 258aa MW: 30079.9 Da PI: 5.0577

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G239300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.4	3.2e-25	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++ r+ ++tr gC+a+l++ +++ +w+vtk+ eHnH+l+ Potri.002G239300.1 78 EFYIAYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYVYrKDRVLRPPPVTREGCQAMLRLALKDGITWVVTKFIAEHNHALM 168 6***************************************998873455667999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-22	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDSTSKQAFD LDETESCFVV ENYDENEFVD DELSENIELC MDEVDKIIEQ SSETLGSIND 60 AMEPCIGMEF KSRDDAREFY IAYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK 120 KYVYRKDRVL RPPPVTREGC QAMLRLALKD GITWVVTKFI AEHNHALMSP SKVPWRGSAK 180 SLVSEDEKDR RIRELTIELN NEKQRCKRRC AAYQEQLRMV LSYVEEHTIH LSNKVQDIVN 240 NVKELENDME DSDCKYV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G239300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002303020.1	0.0	protein FAR1-RELATED SEQUENCE 8
TrEMBL	B9GNH4	0.0	B9GNH4_POPTR; Uncharacterized protein
STRING	POPTR_0002s24030.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44
Representative plant	OGRP8956	5	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	9e-39	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.002G239300.1
Entrez Gene	7488615