PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G239300.3

Common Name

POPTR_0002s24030g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 190aa MW: 21833.7 Da PI: 5.0099

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G239300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.4	1.6e-25	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++ r+ ++tr gC+a+l++ +++ +w+vtk+ eHnH+l+ Potri.002G239300.3 78 EFYIAYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYVYrKDRVLRPPPVTREGCQAMLRLALKDGITWVVTKFIAEHNHALM 168 6***************************************998873455667999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-23	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MDSTSKQAFD LDETESCFVV ENYDENEFVD DELSENIELC MDEVDKIIEQ SSETLGSIND 60 AMEPCIGMEF KSRDDAREFY IAYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK 120 KYVYRKDRVL RPPPVTREGC QAMLRLALKD GITWVVTKFI AEHNHALMSP SKVPWRGSAK 180 SLVSEVCFL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G239300.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002303020.1	1e-137	protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2K2BNM1	1e-136	A0A2K2BNM1_POPTR; Uncharacterized protein
TrEMBL	B9GNH4	1e-136	B9GNH4_POPTR; Uncharacterized protein
STRING	POPTR_0002s24030.1	1e-137	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-23	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.002G239300.3
Entrez Gene	7488615