PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G252800.1
Common NamePOPTR_0002s25410g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 616aa    MW: 67366 Da    PI: 7.6158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G252800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15371417455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Potri.002G252800.1 371 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 417
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-21364433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-16370421No hitNo description
PfamPF000103.8E-13371417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-21371428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MNPYVPDFEM DDDYSLPPPP STHTRPRKPA MQEEEIMELL WQNGQVVMHS QRSQKKSSPP  60
PSELDDAVLP ADQLPGTKEI RSSHDQQQEH HHLFMQEDEM ASWLNHPLND TNFDHDFCAD  120
LLYPPTASTA SITREAAVTN AAASTVRGAT QRMEARSYPA VSAPRPPIPP VRRAEVVQNF  180
AYFSRHRAGG VSESGRSNSK SVVRESTVVD SCETPTARIS ETAFARSADN TCGTINGAAV  240
AGTVSSAPSS NRETMTNPCE MTSTSSPGCS SASAELPALM SPVEDRKRKG REEEAECHSE  300
FIAISITMAH GNQPQSVAIR QKTQNSADSS KPLQGRRDAA NPLKDAEFES ADAKKRIRGS  360
MSSKRSRAAE VHNLSERRRR DRINEKMRAL QELIPRCNKS DKASMLDEAI EYLKSLQLQV  420
QMMSMGCSMV PMMFPGFQQY MPPMGIGMGM GMEMGLSRPM MPFPNILAGA PSATPAAAAH  480
LVPRFPVPPF HVPPIPAPDP SRVQPTNQVD PMLGSPGQQN PNQPRVPNFV DPYQHYLGLY  540
QMHLPGVPRN QAMAQPSTSK PSTSRVAENP GNHQSGCDGE KMAHAFPSSQ AKKQEWKMGK  600
GINGVMLRGC PPLSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352358AKKRIRG
2375380ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.136930.0stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G252800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2976950.0KC297695.1 Populus tomentosa PIL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024540.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF1
TrEMBLA0A3N7FKR00.0A0A3N7FKR0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s25410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-62phytochrome interacting factor 3-like 5