PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G260000.1
Common NamePOPTR_0002s26160g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 97aa    MW: 10977.2 Da    PI: 7.6045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G260000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.6e-08652247
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                         +WT    +l+ +a + +  +   +W+  ar +g  +t +++k ++q++
  Potri.002G260000.1  6 SNWTSKQNKLFENALAIYDQEspdRWHNLARAVG--KTVEEVKKHYQML 52
                        58*****************99************8..9**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.6E-6455IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-4659IPR009057Homeodomain-like
SuperFamilySSF466896.14E-12660IPR009057Homeodomain-like
CDDcd001679.38E-5753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASGSSNWTS KQNKLFENAL AIYDQESPDR WHNLARAVGK TVEEVKKHYQ MLVEDVQQIE  60
AGEIPLPNYT RRSGASNKSY HCNDDQAQRV KNLNLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-288951192RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.50321e-165stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G260000.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453601e-162EF145360.1 Populus trichocarpa clone WS01123_L07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303127.11e-67protein RADIALIS-like 3
SwissprotQ1A1733e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA9PAX03e-66A9PAX0_POPTR; MYB-like family protein
STRINGPOPTR_0002s26160.16e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-33RAD-like 6
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]