PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G011100.1
Common NamePOPTR_0003s00450g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 122aa    MW: 13994.2 Da    PI: 10.0737
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G011100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.5e-14693187
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87
                        f+k+l  s +  + r+ +p k ++++   +g+   sk+  ++d +g++W+++++ rk++     vl++GW eF+k   Lk+gD v+F++++ 
  Potri.003G011100.1  6 FIKEL--SKTDIEYRMAVPMKSLDAFripEGE--HSKDFGVTDIHGKRWRFRCSTRKSDPYpkPVLSSGWIEFAKTRSLKVGDEVTFSVVDM 93
                        67777..55555567999****9999776444..678999*************76666655889************************6643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-17392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-14494IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.5184107IPR003340B3 DNA binding domain
CDDcd100172.84E-17588No hitNo description
SMARTSM010190.00286107IPR003340B3 DNA binding domain
PfamPF023621.3E-11695IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MPKNLFIKEL SKTDIEYRMA VPMKSLDAFR IPEGEHSKDF GVTDIHGKRW RFRCSTRKSD  60
PYPKPVLSSG WIEFAKTRSL KVGDEVTFSV VDMKGAEDLE LGIQARKRIK LFGQEFWSNP  120
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G011100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139260.0AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141000.0AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303143.11e-85B3 domain-containing transcription factor NGA1
RefseqXP_024448004.11e-85B3 domain-containing transcription factor NGA1-like
TrEMBLB9GZ483e-84B9GZ48_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00450.15e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-07related to ABI3/VP1 2