PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G016400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13872.8 Da    PI: 8.24
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G016400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.66.8e-11490188
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                        f k+l   d+  + rl++p ++++ h    g+  + ++l ++d+ g+   +++   ++  ++ vl+kGW++Fv   gL++gD vv+++++++
  Potri.003G016400.1  4 FSKEL--TDTDVRFRLSFPTHCLQ-HldfAGN--NLVDLHVKDSYGELRVIRCLKrDGDYDKPVLSKGWRKFVAYYGLRVGDKVVLHREDDH 90
                        56777..455556789***99995.5577444..6789********99999994435555669************************76654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-13391IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-153102No hitNo description
Gene3DG3DSA:2.40.330.101.7E-13392IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00924104IPR003340B3 DNA binding domain
PfamPF023626.7E-8691IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MQIFSKELTD TDVRFRLSFP THCLQHLDFA GNNLVDLHVK DSYGELRVIR CLKRDGDYDK  60
PVLSKGWRKF VAYYGLRVGD KVVLHREDDH NLGSQFRIEA KRSIMLFGEE AWGDVTRAN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.128731e-175bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G016400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103440.0AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452698.12e-84uncharacterized protein LOC18096619
RefseqXP_024452699.12e-84uncharacterized protein LOC112326842
TrEMBLA0A2K2B0234e-83A0A2K2B023_POPTR; Uncharacterized protein
STRINGPOPTR_0003s01200.13e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414