PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G016700.1
Common NamePOPTR_0074s00200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13846.8 Da    PI: 9.2455
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G016700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.1e-12490188
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88
                        f kvl   d+  + r+++p +++++    g+  +s++l ++d+sg+   +++  rk +    vl+kGW +Fv + gL++gD vv+++++++
  Potri.003G016700.1  4 FSKVL--RDTDVRVRFSFPTHCLQHLdfAGN--NSVDLHVKDSSGELRVIRCLKRKEDYDkPVLSKGWLKFVADYGLRVGDKVVLHREDDQ 90
                        56666..566666789999999955576444..799*********99999995544333369************************76553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-13390IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-14391IPR015300DNA-binding pseudobarrel domain
CDDcd100175.42E-153102No hitNo description
PfamPF023624.9E-9691IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MQIFSKVLRD TDVRVRFSFP THCLQHLDFA GNNSVDLHVK DSSGELRVIR CLKRKEDYDK  60
PVLSKGWLKF VADYGLRVGD KVVLHREDDQ NLGSQFRIEA KRRINLFGEE VWGDVTRAN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.128731e-160bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G016700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103441e-174AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452700.12e-83uncharacterized protein LOC112326843
RefseqXP_024452701.12e-83uncharacterized protein LOC112326844
TrEMBLA0A2K2B0306e-82A0A2K2B030_POPTR; Uncharacterized protein
STRINGPOPTR_0074s00200.16e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414