PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G018300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 237aa    MW: 27137.1 Da    PI: 4.7283
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G018300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.9e-10490188
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                        f kvl   d+  + r+++p +++e+    g+  +s++l ++d+ g+   +++   ++  ++ vl+ GW +Fv++ gL++gD+vv+++++++
  Potri.003G018300.1  4 FSKVL--RDTDVHVRFSFPTHCLEHLdfAGN--NSVDLYVKDSCGELRVIRCLKrNGVYDKPVLSMGWLKFVDDYGLRVGDMVVLHREDDH 90
                        56777..566666789***999966676444..799*********99999995524444559************************76553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-12391IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-13391IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-143102No hitNo description
PROSITE profilePS513756.906133167IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.5E-4139164IPR002885Pentatricopeptide repeat
PfamPF015350.019139164IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.852195229IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-4197228IPR002885Pentatricopeptide repeat
PfamPF015357.1E-6197227IPR002885Pentatricopeptide repeat
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MQIFSKVLRD TDVHVRFSFP THCLEHLDFA GNNSVDLYVK DSCGELRVIR CLKRNGVYDK  60
PVLSMGWLKF VDDYGLRVGD MVVLHREDDH NLGSQFMIEA KRRMKLFGEE DWGEDLLRGC  120
WVLLDTCLME FLLEMDFLSM TDGYSKRNCW DETWKLFDSM SVEGNVEPEE VTMIAARSAC  180
SQKGGGIFDT MGVRDVFSWT RMVNGYAKSG ELELARMSFN EMPERNVVSW SAMIAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.128731e-143bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G018300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103440.0AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K2B0411e-174A0A2K2B041_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414