PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G018400.1
Common NamePOPTR_0003s01240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13896.7 Da    PI: 6.3491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G018400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-1113901288
                        HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3 12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
                         + r++lp +++++    g+  + ++l ++d+sg+   +++   +   ++ vl+kGW +Fv + gL++ D+vv+++++++
  Potri.003G018400.1 13 VRFRFSLPAHCLQHLdfAGN--NYVDLHVKDSSGELRVIRCLKrNEDYDKPVLSKGWLKFVADYGLRADDMVVLHREDDH 90
                        56789***999955577444..6789********9999999653444455*************************76654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-12392IPR015300DNA-binding pseudobarrel domain
CDDcd100178.05E-123102No hitNo description
SuperFamilySSF1019361.96E-11791IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-81491IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MQIFSEVLGD TDVRFRFSLP AHCLQHLDFA GNNYVDLHVK DSSGELRVIR CLKRNEDYDK  60
PVLSKGWLKF VADYGLRADD MVVLHREDDH NLGSQFRIEA KRRIKLFGEE DWSDVTRAN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.128731e-158bud| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G018400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103440.0AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303175.26e-84uncharacterized protein LOC7478130
TrEMBLB9GZR31e-82B9GZR3_POPTR; B3 family protein
STRINGPOPTR_0003s01240.12e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414