PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G031200.1

Common Name

POPTR_0003s02550g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 733aa MW: 85391.1 Da PI: 4.8568

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G031200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.6e-22	124	207	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAk++GF +r+++s ++++++e + ++C++eg++++++ + ++r+etrtgC a+l++++ ++++w+v++++leHnH + Potri.003G031200.1 124 NYYNCYAKDLGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTSKEVH-----SRRKETRTGCLAMLRLRLVESNRWRVDEVKLEHNHLF 207 69**************************************98877.....8999*****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-19	124	207	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.9E-29	329	420	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.878	614	650	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	625	652	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MIEIEEGSQN SEQILEEEGD DLEFDSNDLE IEGDDPGIDD DDLGIEDNNL ELEDKNLENE 60 GHDLPEGNDL EDNCEQLFDI EYHVLENNRD DATVEDVRNG DFLGKDYPPP FVGMQFESYD 120 DAYNYYNCYA KDLGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTSKEVH SRRKETRTGC 180 LAMLRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKK MDAGAKRKVE PTVDVEVRTI 240 KLYRTAAVDP LGYGSTNSNE GESSQHVDRS KRLKLKKGDA QIIHNYFCQV QLTNPNFFYL 300 MDLNDEGFLR NVFWIHYRSR AAYGYFSDVV IFDTTCLLNK YEIPLFAFVG VNQHGQSILL 360 GCGLLVDETF ETYIWLFRVW LTCMLGRPPQ TIITDQCKAM QGAIAEVFPR AHHRFCLSRV 420 AHKILDNLGM LQDYEGFQRT LNVTIHDSLK VDEFEMAWED MIQRFRIADN EWLRTCYEDR 480 ERWVPVYSKD TSFAGISTFL KDESTQFFNG YVSQQTTLKE FFDMNELVLQ KKYQKEALDD 540 FESRNSSPIL RTGSFYELQL SRVYTNEIFR RFQDEVVMMS SCFGITQGHT SGPLVTYVIK 600 ERQGEENSRD IKNFEVMYDK RGAEVRCICS CFNFKGYLCR HALCILNYNG VEEIPPLYIL 660 ARWRKDLKRF YVPDGGSNNV DIANPVQWFD HLYRRAMQVV EEGMISQDRY MVAWQAFKES 720 LNKVRLVAEK HL*

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MIEIEEGSQN SEQILEEEGD DLEFDSNDLE IEGDDPGIDD DDLGIEDNNL ELEDKNLENE  60
GHDLPEGNDL EDNCEQLFDI EYHVLENNRD DATVEDVRNG DFLGKDYPPP FVGMQFESYD  120
DAYNYYNCYA KDLGFAIRVK SSWTKRNSKE KRGAVLCCNC EGFKTSKEVH SRRKETRTGC  180
LAMLRLRLVE SNRWRVDEVK LEHNHLFDPE RAQNSKSHKK MDAGAKRKVE PTVDVEVRTI  240
KLYRTAAVDP LGYGSTNSNE GESSQHVDRS KRLKLKKGDA QIIHNYFCQV QLTNPNFFYL  300
MDLNDEGFLR NVFWIHYRSR AAYGYFSDVV IFDTTCLLNK YEIPLFAFVG VNQHGQSILL  360
GCGLLVDETF ETYIWLFRVW LTCMLGRPPQ TIITDQCKAM QGAIAEVFPR AHHRFCLSRV  420
AHKILDNLGM LQDYEGFQRT LNVTIHDSLK VDEFEMAWED MIQRFRIADN EWLRTCYEDR  480
ERWVPVYSKD TSFAGISTFL KDESTQFFNG YVSQQTTLKE FFDMNELVLQ KKYQKEALDD  540
FESRNSSPIL RTGSFYELQL SRVYTNEIFR RFQDEVVMMS SCFGITQGHT SGPLVTYVIK  600
ERQGEENSRD IKNFEVMYDK RGAEVRCICS CFNFKGYLCR HALCILNYNG VEEIPPLYIL  660
ARWRKDLKRF YVPDGGSNNV DIANPVQWFD HLYRRAMQVV EEGMISQDRY MVAWQAFKES  720
LNKVRLVAEK HL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.10957	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G031200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147781	1e-136	EF147781.1 Populus trichocarpa clone WS0124_P20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006385296.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	U5GHZ0	0.0	U5GHZ0_POPTR; Uncharacterized protein
STRING	POPTR_0003s02550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Potri.003G031200.1
Entrez Gene	18096695

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]