PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G031400.1

Common Name

POPTR_0003s02570g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 659aa MW: 76224 Da PI: 7.9232

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G031400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.2	4.9e-22	50	133	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH+l Potri.003G031400.1 50 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMVRMRLADSKRWRVLEVMLEHNHSL 133 69***************************************9988.....99*******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-19	50	133	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-29	253	346	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.73	540	576	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.8E-4	550	572	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	551	578	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MAEAGCSNER LTNGELNEKE KELDDGTEEK KEFVAPAVGM EFESYDDAYN YYNCYAKEVG 60 FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMV RMRLADSKRW 120 RVLEVMLEHN HSLGAKIYRP VKKVSTGNKR KSLSSNSDAE GRTIKLYRAL VIDSEGNGNS 180 SLNARDVMNF SELPDQLNLK RGDAQAIYNY FCRMQLTNPN FFYLMDLNDE GHLRNVFWVD 240 ARSRASCGYF GDVVYIDNTY LSSKFEIPLV AFVGTNHHSQ SVLLGCGLLA GETTESYIWL 300 FKAWITCMSG CSPQTIITDR CRTLQTAIAE AFPRAHHCFG LSHIMKRVPE KLGGLRHYDA 360 IKKAFMKAVY ETLKVIEFEV AWGFMVQRFG VGDHEWLQSL YEDRVRWAPV YLKDTVFAGM 420 SASRSGEILN PFFERYVHKQ TPLKEFLDKY ELALQKKHKE ETIADIESRS VGPALKTRCS 480 FELQLSKLYS KEIFKKFQFE VEEMYSCFST TQIHVDGPII IFLVKERVLG ESNRREIRDF 540 EVLYNRSAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI PCKYILPRWK KDYKRLYIPD 600 HSSNDVDSTD HMQWFNQLYR SALQVVEEGV ISLEHYSVAL EAFEESQNRV REVEEKQA*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MAEAGCSNER LTNGELNEKE KELDDGTEEK KEFVAPAVGM EFESYDDAYN YYNCYAKEVG  60
FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMV RMRLADSKRW  120
RVLEVMLEHN HSLGAKIYRP VKKVSTGNKR KSLSSNSDAE GRTIKLYRAL VIDSEGNGNS  180
SLNARDVMNF SELPDQLNLK RGDAQAIYNY FCRMQLTNPN FFYLMDLNDE GHLRNVFWVD  240
ARSRASCGYF GDVVYIDNTY LSSKFEIPLV AFVGTNHHSQ SVLLGCGLLA GETTESYIWL  300
FKAWITCMSG CSPQTIITDR CRTLQTAIAE AFPRAHHCFG LSHIMKRVPE KLGGLRHYDA  360
IKKAFMKAVY ETLKVIEFEV AWGFMVQRFG VGDHEWLQSL YEDRVRWAPV YLKDTVFAGM  420
SASRSGEILN PFFERYVHKQ TPLKEFLDKY ELALQKKHKE ETIADIESRS VGPALKTRCS  480
FELQLSKLYS KEIFKKFQFE VEEMYSCFST TQIHVDGPII IFLVKERVLG ESNRREIRDF  540
EVLYNRSAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI PCKYILPRWK KDYKRLYIPD  600
HSSNDVDSTD HMQWFNQLYR SALQVVEEGV ISLEHYSVAL EAFEESQNRV REVEEKQA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G031400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006385298.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	B9MWN4	0.0	B9MWN4_POPTR; Uncharacterized protein
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Potri.003G031400.1
Entrez Gene	18096697

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]