PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G060400.1

Common Name

POPTR_0003s05910g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CPP

Protein Properties

Length: 164aa MW: 17949.2 Da PI: 6.6993

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G060400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47	4.9e-15	79	118	5	41
TCR 5 gC...nCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 gC nCk+s+Clk+YCeCfaag++C ++C+Ce+C+Nk+e Potri.003G060400.1 79 GCrrrNCKRSRCLKLYCECFAAGNYCLDTCSCENCFNKSE 118 554448*******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.6E-12	78	119	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	17.095	79	163	IPR005172	CRC domain
Pfam	PF03638	5.2E-11	84	116	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGDGQQESQA AVAAGSSSYQ SMSTMQTPRD SLHSIPFEQQ ATLCEGTMPS SENADIIELN 60 QMSPERNSKK AKYSTESEGC RRRNCKRSRC LKLYCECFAA GNYCLDTCSC ENCFNKSEYA 120 DAVLHMRQQI EARNPLAFAP KVVKHTTISP VNMMAGVGCF DGC*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers and at significant levels in leaves. Detected with highest levels in developing ovules and microspores, and in petals. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G060400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452820.1	1e-83	CRC domain-containing protein TSO1
Swissprot	Q8L548	2e-29	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	A0A3N7EUD5	2e-82	A0A3N7EUD5_POPTR; Uncharacterized protein
STRING	POPTR_0003s05910.1	1e-116	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14277	14	17
Representative plant	OGRP993	17	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	2e-31	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Potri.003G060400.1
Entrez Gene	7475721

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]