PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G072900.1
Common NamePOPTR_0003s07050g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 122aa    MW: 14143.3 Da    PI: 9.2735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G072900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.7e-16693187
                        EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87
                        f k+l  s +  ++r+ +p + ++++   +g+   sk+  ++d +g++W+++++ rk+++     l++GW eFvk  +L+egD v+F++++ 
  Potri.003G072900.1  6 FTKKL--SKTDIKHRMAVPLDSLDAFqipEGE--HSKEFGVTDIHGERWRFRCRSRKTDRFpkPALSSGWMEFVKTRDLREGDEVTFSVMDM 93
                        77888..77777789********999655433..6789***************999998889999***********************7653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-18392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15494IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.184107IPR003340B3 DNA binding domain
CDDcd100172.75E-16588No hitNo description
SMARTSM010191.1E-56107IPR003340B3 DNA binding domain
PfamPF023622.0E-12695IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MPKLLFTKKL SKTDIKHRMA VPLDSLDAFQ IPEGEHSKEF GVTDIHGERW RFRCRSRKTD  60
RFPKPALSSG WMEFVKTRDL REGDEVTFSV MDMKGAEDLE LGIQARKRIE LFGQVFWSEP  120
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G072900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139261e-108AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141001e-108AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303143.11e-67B3 domain-containing transcription factor NGA1
RefseqXP_024448004.11e-67B3 domain-containing transcription factor NGA1-like
TrEMBLB9GXZ94e-83B9GXZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s07050.17e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-07auxin response factor 17