PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G074400.1

Common Name

POPTR_0003s07200g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 222aa MW: 24836.1 Da PI: 6.101

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G074400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	4.9e-05	31	80	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r ++erE+ R+++N+ f eL + l + ++ + Ka++L ++++ +k+L Potri.003G074400.1 31 KRIHKSEREKLKREQLNELFLELASALELS----QPNNGKASMLCETTRLLKDL 80 68899**********************997....45677777777777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.01E-5	28	85	No hit	No description
SuperFamily	SSF47459	9.81E-11	29	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.426	30	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-6	30	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSMGSELNET VEDVTENRCF PAGENKGKVP KRIHKSEREK LKREQLNELF LELASALELS 60 QPNNGKASML CETTRLLKDL HTQIESLKKE NVALLSESHY VTVEKNELRE ESSALEHQIG 120 KLHSELEMRA ASQSKPDLNV PPPEFLQPPH FPVDSFRLPA VDAVALQQTS TVFVVPISPD 180 HVQGFPMATS NVSKPHPRYP TAADSWPSQL LREQQIGRKE V*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.8051	0.0	bud\| catkin\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G074400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452610.1	1e-162	transcription factor bHLH47
Swissprot	Q9SN74	4e-60	BH047_ARATH; Transcription factor bHLH47
TrEMBL	B9GY15	1e-160	B9GY15_POPTR; Uncharacterized protein
STRING	POPTR_0003s07200.1	1e-161	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8223	25	31
Representative plant	OGRP6793	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	3e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Potri.003G074400.1
Entrez Gene	7461965

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]