PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G082800.2
Common NamePOPTR_0003s08080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 537aa    MW: 59898.1 Da    PI: 7.184
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G082800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Potri.003G082800.2  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                        99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.4E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-10545No hitNo description
CDDcd002026.62E-16654No hitNo description
Gene3DG3DSA:3.30.50.102.0E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003202.1E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF139191.6E-11278387IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSRLKSVSI SKNKEVKLLK RKPNYDNRVA LDYNQGYRKV VDEDTSNRSS SGSAISNPES  120
CAQFGSAEAS PAQSVVWDSL VPSRKRTCVN RPKPSSVEKL TKDLYTILHE QQSSCFSGSS  180
EEDLLFDNET PMVSVEIGHG SVLIRHPSSI ARDEESEASS LSVENKQYLT NEAYSHPVIL  240
PVHNENKSVN TTYPITETTK NLTGQGMQQE QLKRDKFPHE KVHILGSHNS PLCSIDLNDI  300
LNFEEFARHL TNEEQQQLLK YLPPLDTTKL PNSIESMFDS PQFKENINSY QQLLSEGVFD  360
LSFSEAKTED CKTLKRLTLS NFLKSKWVER YHLLKKCKNS NGKSFVGKGP NPDVVAMSNI  420
AGAKRSRDSP SQKFSEVKLM KSPKRIIMKA TYENKELIDN DGSCFSPRSL FALPTDGSSL  480
MLDSLHFVDE SSDQDLLLDI PSNGSFAQAE LFYPTNSFGQ QASTSSSSIY PHLGRP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.87120.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G082800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470260.0EF147026.1 Populus trichocarpa clone WS01226_G08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385556.10.0GATA transcription factor 26 isoform X1
SwissprotQ8W4H11e-164GAT26_ARATH; GATA transcription factor 26
TrEMBLA9PFA90.0A9PFA9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.11e-163GATA transcription factor 26