PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G106500.2

Common Name

POPTR_0003s10570g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

BES1

Protein Properties

Length: 675aa MW: 76262.6 Da PI: 6.0937

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G106500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	143.2	2.3e-44	73	197	2	134
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 g+g+++++kE+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+reAGw+ve DGttyr++ p ++gs+ + +es Potri.003G106500.2 73 GKGKREREKEKERTKLRERHRRAITSRMLTGLRQYGNFPLPARADMNDVLAALAREAGWTVETDGTTYRQSPPPS----HTGSFGVRPVES 159 899******************************************************************776555....889998888888 PP DUF822 93 slqsslkssalaspvesysaspksssfpspssldsislasa..a 134 +l k++a++ e + ++++ ++++sp slds+ +++ + Potri.003G106500.2 160 PLL---KNCAVK---ECQPSVLRIDESLSPGSLDSMVISERenS 197 866...666655...45667788999999999999999877441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.1E-44	73	210	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.03E-159	233	668	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	3.8E-173	235	667	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	8.5E-85	260	632	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-54	273	287	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-54	294	312	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-54	316	337	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-54	409	431	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-54	482	501	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-54	516	532	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-54	533	544	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-54	551	574	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.1E-54	589	611	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MNTNNSNQDL LINPQQTQIP QPDPYSHLPH PVQPGPSPHP HPQTRRPRGF AATAAAAASA 60 DNTSAVSSPN ASGKGKRERE KEKERTKLRE RHRRAITSRM LTGLRQYGNF PLPARADMND 120 VLAALAREAG WTVETDGTTY RQSPPPSHTG SFGVRPVESP LLKNCAVKEC QPSVLRIDES 180 LSPGSLDSMV ISERENSRNE KYTSTSPINS VIECLDADQL IQDVHSGMHQ NDFTENSYVP 240 VYVMLANGFI NNCCQLIDPQ GVRQELSHMK SLDVDGVVVE CWWGVVEAWS PQKYAWSGYR 300 ELFNIIQEFK LKLQVVMAFH EYGGTDSGDV LISLPQWVLE IGKDNQDIFF TDREGRRNTE 360 CLSWGIDKER VLKGRTGIEV YFDFMRSFRT EFNDLFTEGL ITAIEIGLGP SGELKYPSFS 420 ERIGWRYPGI GEFQCYDKYS QQNLRKAAKL RGHSFWARGP DNAGQYNSRP HETGFFCERG 480 DYDSYFGRFF LHWYSQSLID HADNVLSLAS FAFEDTKIII KVPAVYWWYR TASHAAELTA 540 GYYNPTNQDG YSPVFEVLKK HSVIMKFVCS GLPLSGFEND EALVDPEGLS WQILNSAWDR 600 GLTVAGVNML ACYDREGYRR VVEMAKPRND PDHHHFSFFV YQQPSALAQG TICFPELDYF 660 IKCMHGEITG DLVS*

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MNTNNSNQDL LINPQQTQIP QPDPYSHLPH PVQPGPSPHP HPQTRRPRGF AATAAAAASA  60
DNTSAVSSPN ASGKGKRERE KEKERTKLRE RHRRAITSRM LTGLRQYGNF PLPARADMND  120
VLAALAREAG WTVETDGTTY RQSPPPSHTG SFGVRPVESP LLKNCAVKEC QPSVLRIDES  180
LSPGSLDSMV ISERENSRNE KYTSTSPINS VIECLDADQL IQDVHSGMHQ NDFTENSYVP  240
VYVMLANGFI NNCCQLIDPQ GVRQELSHMK SLDVDGVVVE CWWGVVEAWS PQKYAWSGYR  300
ELFNIIQEFK LKLQVVMAFH EYGGTDSGDV LISLPQWVLE IGKDNQDIFF TDREGRRNTE  360
CLSWGIDKER VLKGRTGIEV YFDFMRSFRT EFNDLFTEGL ITAIEIGLGP SGELKYPSFS  420
ERIGWRYPGI GEFQCYDKYS QQNLRKAAKL RGHSFWARGP DNAGQYNSRP HETGFFCERG  480
DYDSYFGRFF LHWYSQSLID HADNVLSLAS FAFEDTKIII KVPAVYWWYR TASHAAELTA  540
GYYNPTNQDG YSPVFEVLKK HSVIMKFVCS GLPLSGFEND EALVDPEGLS WQILNSAWDR  600
GLTVAGVNML ACYDREGYRR VVEMAKPRND PDHHHFSFFV YQQPSALAQG TICFPELDYF  660
IKCMHGEITG DLVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-124	237	628	10	401	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G106500.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002304400.2	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2K2B4Z1	0.0	A0A2K2B4Z1_POPTR; Beta-amylase
STRING	POPTR_0003s10570.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Potri.003G106500.2
Entrez Gene	7491925

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]