PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G112800.3

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 159aa MW: 17607.4 Da PI: 6.7019

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G112800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	93	7.3e-29	11	127	3	121
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekee 90 + sseq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++ a + hl++s+ + ll+e + + n+ n+++ + Potri.003G112800.3 11 LLPSSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHLGHSFFSPshnLLDEIPNPTPNFLINQTNVN 101 5679*****************************************999999999999***988723344444444444444433333 PP YABBY 91 sastsvsseklsenedeevprvppvirPPek 121 + s+ + d+e+pr+p ++r e Potri.003G112800.3 102 ----DFSV-PVRGMADHELPRPPVINRRTEN 127 ....3333.3345667888888888887775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.6E-27	14	70	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSSSSTLSLD LLPSSEQLCY VHCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRG 60 LLLPSANQFH LGHSFFSPSH NLLDEIPNPT PNFLINQTNV NDFSVPVRGM ADHELPRPPV 120 INRRTENHHI VVIFPSFFLI IIFSLLLFYQ ESLFASLG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.17705	0.0	bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G112800.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582967.1	3e-77	protein YABBY 4
TrEMBL	B9T2V4	5e-76	B9T2V4_RICCO; Axial regulator YABBY1, putative
STRING	XP_002532573.1	9e-77	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	4e-26	YABBY family protein

Link Out ? help Back to Top
Phytozome	Potri.003G112800.3