PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G143000.2

Common Name

POPTR_0003s14300g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 954aa MW: 104676 Da PI: 5.4899

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G143000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.5	6.3e-29	574	625	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk Lgvc+T++KriCRq+GI+RWP+Rki+++ Potri.003G143000.2 574 AEKTISLEVLQQYFAGSLKDAAKRLGVCPTTMKRICRQHGISRWPSRKINKV 625 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.302	564	645	IPR003035	RWP-RK domain
Pfam	PF02042	6.0E-26	577	625	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-22	850	941	No hit	No description
SMART	SM00666	5.5E-25	857	939	IPR000270	PB1 domain
PROSITE profile	PS51745	24.619	857	939	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.6E-26	857	938	No hit	No description
CDD	cd06407	1.45E-34	858	938	No hit	No description
Pfam	PF00564	6.8E-18	858	938	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence Send to blast
MQKPIEGRGV GGGGGEPEGM KSMELDLDLD NSWPLDQISF MSSNPMSPFL ISTSTEQPCS 60 PLWAFSDAVD DRLAATASGQ ASPAFAAAAA PRLSDYPILL TCNPNLITES QGENDDNSKL 120 PSPFLGLMPI DNPDGYCMIK ERMTQALRYF KESTEQHVLA QVWAPVKNGG QHVLTTSGQP 180 FVLDPHSNGL HQYRMVSLMY MFSVDGESDR ELGLPGRVFR QKSPEWTPNV QYYSSKEYSR 240 LDHALRYNVR GTLALPVFEP SGQSCVGVLE LIMNSQKINY APEVDKVCKA LEAVNLKSSE 300 ILDPPSIQIC NEGRQNALSE ILEILTMVCE THKLPLAQTW VPCIHRSVLT YGGGLKKSCT 360 SFDGNCNGQV CMSTTDVAFY VVDARMWGFR EACLEHHLQK GQGVAGRAFL SQNSCFCPDI 420 TQFCKTEYPL VHYARMFGLT SCFAIFLRSS YTGDDDYILE FFLPPSITDS HEQKTFLGSI 480 LATMKQDFQS LKVASGMDLE EEGFVEMIEA TTNGRLECIQ IPQPTKSPPG DNMLPNEGHI 540 EQIDSEKNKL MFDLDVIKNG GRTKKPTERK RGKAEKTISL EVLQQYFAGS LKDAAKRLGV 600 CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKWVIESVQ GTEGTFDLTP LTTSPLHVAD 660 GTISWPSNLN GSNQQTSPNS KPPEYHGNRN GSPTCRKPGS DGQAGSNRSK KRSGSRDGSA 720 GTPTSHDSCQ GSPENESAPV KDPSVSPVHE RCIKAGGSPG LALQQTKEQN LSSAYSIPDA 780 LVATEAHEPF GGMLIEDAGS SKDLRNLCPA VAEAIVDERV PESSWTDPPC FNMLPTQMFA 840 APLHAIPQAT PRQEMKSVTI KATYREDVIR FRISLSSGIV ELKEEVAKRL KLEVGTFDIK 900 YLDDDQEWVL IACDADLLEC MDVSRSSSSN IIRLSVHDAN ANLGSSCEST GEL*

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence Send to blast

MQKPIEGRGV GGGGGEPEGM KSMELDLDLD NSWPLDQISF MSSNPMSPFL ISTSTEQPCS  60
PLWAFSDAVD DRLAATASGQ ASPAFAAAAA PRLSDYPILL TCNPNLITES QGENDDNSKL  120
PSPFLGLMPI DNPDGYCMIK ERMTQALRYF KESTEQHVLA QVWAPVKNGG QHVLTTSGQP  180
FVLDPHSNGL HQYRMVSLMY MFSVDGESDR ELGLPGRVFR QKSPEWTPNV QYYSSKEYSR  240
LDHALRYNVR GTLALPVFEP SGQSCVGVLE LIMNSQKINY APEVDKVCKA LEAVNLKSSE  300
ILDPPSIQIC NEGRQNALSE ILEILTMVCE THKLPLAQTW VPCIHRSVLT YGGGLKKSCT  360
SFDGNCNGQV CMSTTDVAFY VVDARMWGFR EACLEHHLQK GQGVAGRAFL SQNSCFCPDI  420
TQFCKTEYPL VHYARMFGLT SCFAIFLRSS YTGDDDYILE FFLPPSITDS HEQKTFLGSI  480
LATMKQDFQS LKVASGMDLE EEGFVEMIEA TTNGRLECIQ IPQPTKSPPG DNMLPNEGHI  540
EQIDSEKNKL MFDLDVIKNG GRTKKPTERK RGKAEKTISL EVLQQYFAGS LKDAAKRLGV  600
CPTTMKRICR QHGISRWPSR KINKVNRSLS KLKWVIESVQ GTEGTFDLTP LTTSPLHVAD  660
GTISWPSNLN GSNQQTSPNS KPPEYHGNRN GSPTCRKPGS DGQAGSNRSK KRSGSRDGSA  720
GTPTSHDSCQ GSPENESAPV KDPSVSPVHE RCIKAGGSPG LALQQTKEQN LSSAYSIPDA  780
LVATEAHEPF GGMLIEDAGS SKDLRNLCPA VAEAIVDERV PESSWTDPPC FNMLPTQMFA  840
APLHAIPQAT PRQEMKSVTI KATYREDVIR FRISLSSGIV ELKEEVAKRL KLEVGTFDIK  900
YLDDDQEWVL IACDADLLEC MDVSRSSSSN IIRLSVHDAN ANLGSSCEST GEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G143000.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453644.1	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2K2B726	0.0	A0A2K2B726_POPTR; Uncharacterized protein
STRING	POPTR_0003s14300.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Potri.003G143000.2
Entrez Gene	7497869

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]