PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G146700.1

Common Name

POPTR_0003s14665g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ZF-HD

Protein Properties

Length: 74aa MW: 8276.66 Da PI: 8.0613

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G146700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	51.4	2.5e-16	18	53	3	39
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaa 39 rYkeClkNhAa++ g+a+DGCgEf+p +eeg+ + Potri.003G146700.1 18 VERYKECLKNHAATICGKAIDGCGEFIPG-EEEGSLE 53 579*************************9.5555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-9	20	54	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.5E-13	20	54	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.0E-14	20	53	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	19.159	21	72	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MDIPLQASRR IKRPYKKVER YKECLKNHAA TICGKAIDGC GEFIPGEEEG SLEAPQVLNL 60 ILIHDMILNR NIN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G146700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002306012.2	3e-17	zinc-finger homeodomain protein 3
Refseq	XP_011005585.1	4e-17	PREDICTED: zinc-finger homeodomain protein 3-like
TrEMBL	B9GY33	1e-46	B9GY33_POPTR; Uncharacterized protein
STRING	POPTR_0004s14270.1	1e-16	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF39528	2	2
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	4e-15	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Potri.003G146700.1
Entrez Gene	7497520