PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G149400.1
Common NamePOPTR_0003s14920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 148aa    MW: 17085.7 Da    PI: 9.1346
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G149400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.32.6e-2271372128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         p G+rF+P+  el+v+yL kkv++k+l++ + i e+d+y+   ++  +   ++e +e+y F+k +kk + g++k r+ ksg+Wk t k+ke
  Potri.003G149400.1   7 PLGYRFKPNSIELLVHYLLKKVKRKPLPC-DSIIECDLYNNSTEEWWEiLKNSEAEEIYCFTKLKKKGHGGSNKDRVSKSGTWKGTQKTKE 96 
                         89***************************.779999*999866665431234466799********************************* PP

                 NAM  92 vlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                         ++++   ++ +vg k+ + f  + +       + +m+ey+l
  Potri.003G149400.1  97 IYVHskgHDMQVGSKRAFRFMPKsSIGFEIDGKVLMDEYQL 137
                         **987777778*********943133333456677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-223140IPR003441NAC domain
PROSITE profilePS5100521.8836148IPR003441NAC domain
PfamPF023651.7E-137137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MESTRIPLGY RFKPNSIELL VHYLLKKVKR KPLPCDSIIE CDLYNNSTEE WWEILKNSEA  60
EEIYCFTKLK KKGHGGSNKD RVSKSGTWKG TQKTKEIYVH SKGHDMQVGS KRAFRFMPKS  120
SIGFEIDGKV LMDEYQLACD LLHGIESP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12431LKKVKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G149400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLU5GN691e-106U5GN69_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0003s14920.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1763745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-15NAC domain containing protein 47