PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G164500.1
Common NamePOPTR_0003s16300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 231aa    MW: 25957.5 Da    PI: 10.1409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G164500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09171217454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h+ +Er RR++i s++  L++l+P +    +k   Ka +L + + Y++ L
  Potri.003G164500.1 171 SHSLAERVRREKISSRMKLLQSLVPGC----DKITGKALVLDEIISYVQFL 217
                         8*************************9....899**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.64E-8165222No hitNo description
SuperFamilySSF474595.1E-14165224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.142167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-14168223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-8173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAVFSYQQQH PASVVDEFQL DSNTNIASGT LFSPNLPYEC LQESSLHAER ILETIHADDN  60
SIAKVPFIST TYHSSTTARH NSSSSMVADL QYCEENRVSQ AMTPTLWQLR KHSSPAIKVK  120
RESKRQKLNL NSSVSRNAKR VRPAKKQKKV PVEPPTGYVH VRARRGEATD SHSLAERVRR  180
EKISSRMKLL QSLVPGCDKI TGKALVLDEI ISYVQFLKDR VQVRINEDTA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G164500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303756.21e-164transcription factor bHLH137
TrEMBLA0A3N7EW881e-163A0A3N7EW88_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16300.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16101510
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-39bHLH family protein