PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G170000.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 175aa    MW: 20108.1 Da    PI: 10.2943
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G170000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.91.7e-25959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krie k+ rq+tfskRrng++KKA  LS LCd++va+++fss+gklye+ss
  Potri.003G170000.2  9 KRIEKKICRQITFSKRRNGLIKKARDLSLLCDVQVALLVFSSSGKLYEFSS 59
                        79***********************************************96 PP
2K-box462.2e-16871741097
               K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         +e  + +++++++   + +++ q+ +R++   + e+L+l +L+q e q++ +l++ R++K+el+le i+ l  kek l+een++L+++
  Potri.003G170000.2  87 AELYHGKYEKKIKSFAELLQTVQSIHRQVGDSNFEELTLSDLEQTEMQVDAALRRTRARKTELMLETINALNDKEKTLREENQRLQTQ 174
                         555667778888888888888889999999999****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.59161IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-34160IPR002100Transcription factor, MADS-box
CDDcd002652.85E-32273No hitNo description
SuperFamilySSF554552.09E-28280IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.06188174IPR002487Transcription factor, K-box
PfamPF014863.6E-1294173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRKKVELKR IEKKICRQIT FSKRRNGLIK KARDLSLLCD VQVALLVFSS SGKLYEFSSA  60
GSLAKILKRH RSYFEEKTAL SNGANDAELY HGKYEKKIKS FAELLQTVQS IHRQVGDSNF  120
EELTLSDLEQ TEMQVDAALR RTRARKTELM LETINALNDK EKTLREENQR LQTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-18182181MEF2 CHIMERA
6byy_B5e-18182181MEF2 CHIMERA
6byy_C5e-18182181MEF2 CHIMERA
6byy_D5e-18182181MEF2 CHIMERA
6bz1_A6e-18182181MEF2 CHIMERA
6bz1_B6e-18182181MEF2 CHIMERA
6bz1_C6e-18182181MEF2 CHIMERA
6bz1_D6e-18182181MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G170000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452189.11e-123MADS-box transcription factor 14 isoform X5
TrEMBLA0A2K2B8E71e-122A0A2K2B8E7_POPTR; Uncharacterized protein
STRINGEOX997863e-52(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.12e-41MIKC_MADS family protein