PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G170200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22715.4 Da    PI: 10.2494
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G170200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.63.9e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienks rqvtfskRrng++KKA ELSvLCd++va+++fss +klye+ss
  Potri.003G170200.1  9 KRIENKSSRQVTFSKRRNGLFKKARELSVLCDVQVAILVFSSCDKLYEFSS 59
                        79***********************************************96 PP
2K-box51.25.6e-1876171398
               K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         k++++s+++++ae ++ ++a+Lk+  + L    R+l G    +L+l +L +Le+qL+  l+++R++K +++le+++ l  +ek+l+een+ 
  Potri.003G170200.1  76 KKTTSSKDANHAEVYYGKHANLKSLAKLLLMVERNLEGPYAMELTLGDLVELEKQLHVTLTHVRDRKIQMMLESVKSLHDQEKMLKEENQL 166
                         45566688999999***************************************************************************** PP

               K-box  94 Lrkkl 98 
                         L+k++
  Potri.003G170200.1 167 LEKQI 171
                         **998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.796161IPR002100Transcription factor, MADS-box
CDDcd002652.42E-36273No hitNo description
SuperFamilySSF554556.8E-31281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-27323IPR002100Transcription factor, MADS-box
PfamPF003197.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-1283171IPR002487Transcription factor, K-box
PROSITE profilePS512979.78187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRKKVELKR IENKSSRQVT FSKRRNGLFK KARELSVLCD VQVAILVFSS CDKLYEFSSV  60
GSTTNILKRY TSHFKKKTTS SKDANHAEVY YGKHANLKSL AKLLLMVERN LEGPYAMELT  120
LGDLVELEKQ LHVTLTHVRD RKIQMMLESV KSLHDQEKML KEENQLLEKQ IVAMKNGKDS  180
DHPLYHPPQQ TTLSLLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18173172MEF2C
5f28_B3e-18173172MEF2C
5f28_C3e-18173172MEF2C
5f28_D3e-18173172MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G170200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452886.11e-143MADS-box protein FLOWERING LOCUS C
TrEMBLA0A2K2B8F21e-142A0A2K2B8F2_POPTR; Uncharacterized protein
STRINGEOX997869e-57(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14472412
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.24e-41AGAMOUS-like 31