PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G207200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 449aa    MW: 49944 Da    PI: 7.3122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G207200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12382427655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l+P+     +k  + +++L +Av+YIk+Lq
  Potri.003G207200.1 382 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 427
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15379439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-12380429No hitNo description
Gene3DG3DSA:4.10.280.103.1E-14381437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-11382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9382427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDLLGSVSCY FCSASLFKLN QETGDSMESD LQHQHHFLHG HNQHQQIHQK QMNSGLTRYQ  60
SAPSSYFSSN LDRDFCEEFL NRPTSPETER IFARFLANSG GNTENIPGSN LCEIKQDSPV  120
KESVSQINQQ PQMMASMNNH SSDTRLHQHQ HQQHQHGNYS ASQGFYQSRS KPPLPDHNPG  180
SGMNHRSTNS TGLERMPSMK PSSGNNPNLV RHSSSPAGLF SNINIEFENG YAVLRDVGDL  240
GAGNRDTTYS AAGRPPSSSG IRSTIAEMGN KNMGENSPDS GGFGETPGNN YDYPIGSWDD  300
SAVMSTGSKR YLTDDDRTLS GLNSSETQQN EEAGNRPPML AHHLSLPKTS AEMSTIENFL  360
QFQDSVPCKI RAKRGCATHP RSIAERVRRT RISERMRKLQ DLVPNMDKQT NTSDMLDLAV  420
DYIKDLQRQF KALSENRARC TCLKKQQP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G207200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164090.0AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304761.10.0transcription factor bHLH122 isoform X1
TrEMBLB9GW810.0B9GW81_POPTR; Uncharacterized protein
STRINGPOPTR_0003s22290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-69bHLH family protein