PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G207200.3
Common NamePOPTR_0003s22290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 423aa    MW: 47145.9 Da    PI: 7.7342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G207200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12356401655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l+P+     +k  + +++L +Av+YIk+Lq
  Potri.003G207200.3 356 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 401
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15353413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.55E-12354403No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14355411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9356401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-11356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MESDLQHQHH FLHGHNQHQQ IHQKQMNSGL TRYQSAPSSY FSSNLDRDFC EEFLNRPTSP  60
ETERIFARFL ANSGGNTENI PGSNLCEIKQ DSPVKESVSQ INQQPQMMAS MNNHSSDTRL  120
HQHQHQQHQH GNYSASQGFY QSRSKPPLPD HNPGSGMNHR STNSTGLERM PSMKPSSGNN  180
PNLVRHSSSP AGLFSNINIE FENGYAVLRD VGDLGAGNRD TTYSAAGRPP SSSGIRSTIA  240
EMGNKNMGEN SPDSGGFGET PGNNYDYPIG SWDDSAVMST GSKRYLTDDD RTLSGLNSSE  300
TQQNEEAGNR PPMLAHHLSL PKTSAEMSTI ENFLQFQDSV PCKIRAKRGC ATHPRSIAER  360
VRRTRISERM RKLQDLVPNM DKQTNTSDML DLAVDYIKDL QRQFKALSEN RARCTCLKKQ  420
QP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G207200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164090.0AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304761.10.0transcription factor bHLH122 isoform X1
TrEMBLB9GW810.0B9GW81_POPTR; Uncharacterized protein
STRINGPOPTR_0003s22290.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-70bHLH family protein