PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G212500.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 673aa    MW: 75454.4 Da    PI: 9.9332
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G212500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-091346337
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                        +W t E++ll++av+++G+++W++Ia ++  +Rt 
  Potri.003G212500.1 13 PWGTLEELLLACAVNRHGTDRWDSIAMEVS-NRTS 46
                        8*****************************.7774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.48E-51066IPR009057Homeodomain-like
SMARTSM007171.4E-51066IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-51146IPR009057Homeodomain-like
PfamPF002492.0E-81346IPR001005SANT/Myb domain
CDDcd001676.00E-51364No hitNo description
SMARTSM002973.5E-1279425IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.5E-14300427IPR001487Bromodomain
SuperFamilySSF473701.57E-16324427IPR001487Bromodomain
CDDcd043695.06E-14328420No hitNo description
PfamPF004392.4E-10330405IPR001487Bromodomain
PROSITE profilePS5001411.298335406IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MAKQQPLQQP STPWGTLEEL LLACAVNRHG TDRWDSIAME VSNRTSTLSS LTSQNCIDKF  60
DDLKRRFGFP TELQNDTASL LVDELRKLRV DELRREVHQR DVSIVSLEMK VKRLEEDREK  120
SLKEKPPDLP KPSPETVAGK SATGEECGDG DERSFNESNS TSQQPQKAEA EAKKERDEDT  180
EVKPEPDSIK DDPDPARLGS DPEAEREWSY NGKLEDEDDK KPKKEMKIES VSRVGVLGPD  240
SNELGESVGE SKREEKEKDI KQINNSNNNN NNNNSDVQSS VSLSLKKKKR RRGSGEGSSS  300
GEEEREGGDD EVSPATKTLP AVKSEPWLKL LEIIRSHQLG SIFEKRLRSQ ESERYKKLIR  360
QHMDLQMIQS RLDKGVYSKC FKKLFKDLLI LLNNAIVFFR KNSPENLAAN ELRAVVLKEM  420
KEKLQKPKPK PVAVKPATEQ YSASFSKPNK STSTMVACSK HSSIKAISEG AGKKDDKKDA  480
EIEEKPKANE KKLEVSIVRI EEKGLKKKTT KERSVSGRRN SRASNMNGEI KHQYGGNELS  540
SHDALEITVD RKESTGRKKL GAASFLKRMK QNSPGQVTEN DDDDSSSSED ESKDSKTVDK  600
KRRRREADRI TKRVTRSSKG RGLGEDSRNI KRGRPPKKQM DSGGGTGKRG REDDDSEVGV  660
GGAGRAKKRS RR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290LKKKKRR
2285290KKKKRR
3285291KKKKRRR
4286291KKKRRR
5599604KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G212500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453671.10.0uncharacterized protein DDB_G0284459
TrEMBLA0A2K2BAG10.0A0A2K2BAG1_POPTR; Uncharacterized protein
STRINGcassava4.1_002976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.13e-27DNA-binding bromodomain-containing protein