PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G213200.2
Common NamePOPTR_0003s21780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 242aa    MW: 25752.9 Da    PI: 9.3552
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G213200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.2e-082954227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        k +lC+ +     Ck+Gd+C+FaHg+
  Potri.003G213200.2 29 KSRLCNKYNTVEGCKFGDKCHFAHGE 54
                        6789999999999***********96 PP
2zf-CCCH35.12.2e-11208232126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C +f + G C +GdrC+FaHg
  Potri.003G213200.2 208 FKTKICENFNK-GSCTFGDRCHFAHG 232
                         69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-132557IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-82657IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2812755IPR000571Zinc finger, CCCH-type
SMARTSM003560.00562754IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-52954IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.75E-14105186IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.7E-16114186IPR004088K Homology domain, type 1
SMARTSM003226.1E-12114184IPR004087K Homology domain
PROSITE profilePS5008414.236115179IPR004088K Homology domain, type 1
PfamPF000135.4E-11117180IPR004088K Homology domain, type 1
CDDcd001054.10E-14117179No hitNo description
Gene3DG3DSA:4.10.1000.102.2E-16205238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868207234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-9207237IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7207233IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9208232IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLPALPPASR NQGAPPPSFP DRSSPPSVKS RLCNKYNTVE GCKFGDKCHF AHGEWELGKA  60
SAASYDDPRA MGPMQGRAAA PYDDPRAMGP MQGRMSRHME HPHQGHGAAA SFGSSATTKI  120
SIDASLAGAI IGKNGVNSKH ICRATGAKLS IREHETDPKK RNIELEGSFD QISQASDMVR  180
QLISNVGQAS GPPMKNSSMH SSGGSNNFKT KICENFNKGS CTFGDRCHFA HGAEELRKSG  240
M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G213200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2396551e-167FJ239655.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396561e-167FJ239656.1 Populus balsamifera isolate Gal08 hypothetical protein gene, partial cds.
GenBankFJ2396571e-167FJ239657.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396581e-167FJ239658.1 Populus balsamifera isolate Gal09 hypothetical protein gene, partial cds.
GenBankFJ2396591e-167FJ239659.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396601e-167FJ239660.1 Populus balsamifera isolate Gal10 hypothetical protein gene, partial cds.
GenBankFJ2396611e-167FJ239661.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396621e-167FJ239662.1 Populus balsamifera isolate Gal11 hypothetical protein gene, partial cds.
GenBankFJ2396631e-167FJ239663.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396641e-167FJ239664.1 Populus balsamifera isolate Gal12 hypothetical protein gene, partial cds.
GenBankFJ2396651e-167FJ239665.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396661e-167FJ239666.1 Populus balsamifera isolate Gal13 hypothetical protein gene, partial cds.
GenBankFJ2396671e-167FJ239667.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396681e-167FJ239668.1 Populus balsamifera isolate Gal15 hypothetical protein gene, partial cds.
GenBankFJ2396691e-167FJ239669.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396701e-167FJ239670.1 Populus balsamifera isolate Nom01 hypothetical protein gene, partial cds.
GenBankFJ2396711e-167FJ239671.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396721e-167FJ239672.1 Populus balsamifera isolate Nom02 hypothetical protein gene, partial cds.
GenBankFJ2396731e-167FJ239673.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
GenBankFJ2396741e-167FJ239674.1 Populus balsamifera isolate Nom03 hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304891.11e-179zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ39e-73C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2K2BAH51e-179A0A2K2BAH5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21780.11e-179(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-51C3H family protein