PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G213300.1
Common NamePOPTR_0003s21770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 227aa    MW: 25423 Da    PI: 8.5925
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G213300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-18180212335
                GATA   3 nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         +C+t +Tp+WR+gp g+ktLCnaCG++yrk+++
  Potri.003G213300.1 180 SCNTDDTPMWRKGPLGPKTLCNACGIKYRKEEE 212
                         8*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-12171216No hitNo description
Gene3DG3DSA:3.30.50.102.9E-13172219IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.8E-14172226IPR000679Zinc finger, GATA-type
CDDcd002021.47E-9175207No hitNo description
PfamPF003202.5E-16179212IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.673180214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MESQWFDQAT DNWKGGCDHQ NNTENNVDLT LKLGLPDDQP QFEQYFRSNR ALKTHQPAIL  60
SFNAPYSQGT NHHDMANAGL NHHGRLNGDN LHGSWPREMM GNHPHYMNTQ YAADSAVGFA  120
AYPKSYSCIN SNPGNFQIPT MNGRTLLNTV ARDGDHGEVG SSSGSRRTFI DHNKRCSNRS  180
CNTDDTPMWR KGPLGPKTLC NACGIKYRKE EEKRRAREAA RRTNGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G213300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453922.11e-167GATA zinc finger domain-containing protein 8
TrEMBLA0A2K2BAH11e-171A0A2K2BAH1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21770.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.11e-13GATA transcription factor 29