PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G010200.1
Common NamePOPTR_0004s01080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19596.9 Da    PI: 5.4256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G010200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.8e-152372149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevaviifsstgklyey 49
                        k+ie+ks   vtf+kRrng++KKA+E + L  da  a++++s++++ y +
  Potri.004G010200.1 23 KKIESKSSLIVTFCKRRNGLFKKASEFCNLYdDASLAIVVLSPNQRPYSF 72
                        68****************************7369**********998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.6E-191575IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.5351576IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-191689IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-91737IPR002100Transcription factor, MADS-box
PfamPF003191.0E-182472IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-93752IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQETELVNTT RRWGTGRKKV EMKKIESKSS LIVTFCKRRN GLFKKASEFC NLYDDASLAI  60
VVLSPNQRPY SFGHPDVNTV VDQCLGDQES SERNNISCSE DTHGKNNMDC DNINEEGEGC  120
WWERSVEDMN LEELEKFRAS LETLKNNVAM RVREERRTRV STRDFLGGFS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G010200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1495750.0AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383903.11e-124agamous-like MADS-box protein AGL62
TrEMBLU5GE231e-122U5GE23_POPTR; Uncharacterized protein
STRINGPOPTR_0004s01080.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1084328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27AGAMOUS-like 62