PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G011000.1
Common NamePOPTR_0004s01140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 118aa    MW: 13942.8 Da    PI: 9.3556
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G011000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-11695390
                        EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3  3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                        kvl++sd+ ++ rl +p + + ++   +g+  +s++ +  d+  + W++k+++r+ ++    +l + W ++v+++gLk gD v+F++d+++++
  Potri.004G011000.1  6 KVLSNSDTANK-RLEFPVRSLPAFpmpDGQ--NSMEFVAFDRLQKPWKFKVSIRNEGRYpkPWLNGEWDDYVHQKGLKKGDKVIFTMDDQENG 95
                        78877777766.6********999976544..78999**************99888877889************************9876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.9383105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-13599IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-11693IPR015300DNA-binding pseudobarrel domain
CDDcd100177.24E-13691No hitNo description
PfamPF023628.9E-9695IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEAMNKVLSN SDTANKRLEF PVRSLPAFPM PDGQNSMEFV AFDRLQKPWK FKVSIRNEGR  60
YPKPWLNGEW DDYVHQKGLK KGDKVIFTMD DQENGDRIYY IRAERKLFGF WYSIDQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G011000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494860.0AC149486.1 Populus trichocarpa clone Pop1-8L22, complete sequence.
GenBankAC1495430.0AC149543.1 Populus trichocarpa clone Pop1-47M20, complete sequence.
GenBankAC1495750.0AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048022.15e-64PREDICTED: uncharacterized protein LOC105142200
TrEMBLB9NBH46e-82B9NBH4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s01140.11e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1531737