PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G026600.1
Common NamePOPTR_0004s02570g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 255aa    MW: 28976.2 Da    PI: 8.4688
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G026600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-162572148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd++l+ +++++G ++W   ++  g+ R++k+c++rw +yl
  Potri.004G026600.1 25 RGAWSPEEDQKLIAYINRHGIRNWIEMPKAAGLLRSGKSCRLRWMNYL 72
                        89******************************99************97 PP
2Myb_DNA-binding45.91.3e-1478121146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++ eE e +++++  lG++ W++Ia++++ gRt++++k++w++
  Potri.004G026600.1  78 RGNFSMEEVETILKLHGILGNR-WSAIAAKLP-GRTDNEIKNFWNT 121
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7692072IPR017930Myb domain
SuperFamilySSF466891.46E-2822119IPR009057Homeodomain-like
SMARTSM007172.2E-122474IPR001005SANT/Myb domain
PfamPF002491.4E-142572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-232679IPR009057Homeodomain-like
CDDcd001675.68E-102772No hitNo description
PROSITE profilePS5129422.66773127IPR017930Myb domain
SMARTSM007171.2E-1377125IPR001005SANT/Myb domain
PfamPF002495.6E-1378121IPR001005SANT/Myb domain
CDDcd001675.10E-980123No hitNo description
Gene3DG3DSA:1.10.10.606.3E-2580126IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDFTCIKLAT MRKIAHNSQN LPLKRGAWSP EEDQKLIAYI NRHGIRNWIE MPKAAGLLRS  60
GKSCRLRWMN YLRPDIKRGN FSMEEVETIL KLHGILGNRW SAIAAKLPGR TDNEIKNFWN  120
TRLKKNYVKN NINTAAQAPK LQGTQTSTAE FKKRKLSENI DVPLPTAPKI LKPEDSEGSP  180
KLPISYFSSS FNLVNDLIIN ENQIIEENVG LLESNGEQCL WGPQFSTEGQ TCMVEDYGDT  240
CTIEMWVQEL LHEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26231255106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G026600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305620.30.0transcription factor MYB14
TrEMBLA0A2K2ANY40.0A0A2K2ANY4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02570.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.15e-55myb domain protein 74