PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G029800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 210aa    MW: 23607.4 Da    PI: 6.0821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G029800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-104185554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +  +ErrRR+++ +++ +Lr l+P       + ++K +i e A+ YI++L
  Potri.004G029800.1 41 NLHAERRRREKLSNRLLTLRALVPII-----TNMNKGTIIEDAITYIQEL 85
                        5579*********************6.....58***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.9033685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1437102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.65E-113890No hitNo description
PfamPF000102.4E-74085IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1340102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-104291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048656Biological Processanther wall tapetum formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MTMKYLAMNE LGLADQEGSC WGRMGRKRTS YDDTVGYKSK NLHAERRRRE KLSNRLLTLR  60
ALVPIITNMN KGTIIEDAIT YIQELKKNVE ALTDMLQEME ASSSEEEFKT RVNEIDASEE  120
MKLCGIKEDV QVTNIEGDKL WIKIILEKKR GGFARLMEKM ACFGLELIDS NVTTSKGAML  180
VTACVEGAFG DTLTVQQTKE LLTQIIKGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449ERRRRE
24550RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G029800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455681.11e-146transcription factor DYT1
TrEMBLA0A2K2AP271e-150A0A2K2AP27_POPTR; Uncharacterized protein
STRINGPOPTR_0004s02920.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Representative plantOGRP1030948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.14e-48bHLH family protein