PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G035300.2
Common NamePOPTR_0004s03530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 790aa    MW: 87129.8 Da    PI: 6.7841
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G035300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18233332198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ + 
  Potri.004G035300.2 233 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE- 321
                         89**************************555567778***************9989999999***9.********************766. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++lv+++++
  Potri.004G035300.2 322 PEGKLVMGFRK 332
                         77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.9E-31229341IPR015300DNA-binding pseudobarrel domain
CDDcd100179.55E-22231332No hitNo description
SuperFamilySSF1019362.09E-19231333IPR015300DNA-binding pseudobarrel domain
PfamPF023628.2E-16233332IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251233334IPR003340B3 DNA binding domain
SMARTSM010192.4E-18233333IPR003340B3 DNA binding domain
PROSITE profilePS5105014.601459509IPR011124Zinc finger, CW-type
PfamPF074965.2E-13464506IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MACERKSFVL TSNPAWSPLF YHAPFPERLK DLSVKSWSQL AGSGPVPWRQ APSLFNPSAA  60
QSELQTRMPY EVDRLNTGER FSAPSLEKRK VEDFSEKFIN GNLRIRLQDI VENGNAGIIG  120
EEQPQPSSSL MEDASGQQFG ITIPYKSISE SNSQIEGSVN ALQPAPPPPF TKHFHGSLHN  180
GVDSSVDGHI RNGKPRTDAR GRSQLLPRYW PRFTDGELQQ ISGNSNSVIK PLFEKMLSAS  240
DAGRIGRLVL PKKCAEAYFP PISQPEGLPL RVQDSKGKEW IFQFRFWPNN NSRMYVLEGV  300
TPCIQNMQLQ AGDIVTFSRL EPEGKLVMGF RKATSAPPSD QDNETSQTGN GVSTKGDAEL  360
DPSPWSKVDK SGYIAKEVLE GKSSIRKRKS STLGSKSKRL RIENEDMIEL KLTWEEAQGL  420
LRPPPDHVPS IVAIEGFEFE EYEDAPVLGK PTIFATDNVG QKIQWVQCED CLKWRKLPAN  480
ALLPSKWACS SNTWDPERSS CSVAQELTAE QLEDLLPSCN LVVTSKRSKD AKKDIDRVEA  540
LEGLDTLANL AILGEGEAFP ASSQATTKHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV  600
CQTVKRRFKT LMMKREKKQS EKEAETKQSE KEAETTRKRQ QEPSAEKLLD DEPSPSSNTG  660
SESGSPNKKK TVSEGSDDDP SRMKSSTSPF KGQIDLNIQP EREDELSPGS DSGGMMRMLQ  720
DATETYLRMQ RFLSSDGDNN PSGNHMLSSG GTREKVSDVI MLGSSHQDAD KDHPSAFSMN  780
ASASTPATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-642113362127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G035300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455352.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K2APD80.0A0A2K2APD8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-162HSI2-like 1