PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G036900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 507aa    MW: 56290.1 Da    PI: 10.5414
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G036900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07943338
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                        +W t+E++ll  av ++G+++W+++a+++   Rt +
  Potri.004G036900.1  9 KWGTWEELLLGGAVIRHGTRDWNLVASELR-ARTVN 43
                        8****************************9.99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.3E-6843IPR001005SANT/Myb domain
CDDcd001670.00281943No hitNo description
SMARTSM002977.7E-16263372IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.1E-14274369IPR001487Bromodomain
SuperFamilySSF473703.01E-17275372IPR001487Bromodomain
PfamPF004399.3E-12278356IPR001487Bromodomain
PROSITE profilePS5001410.36283353IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGTEILINKW GTWEELLLGG AVIRHGTRDW NLVASELRAR TVNCPYTFTP EICKAKYEDL  60
QQRYSGCKAW FEELRKQRMA ELRRALEQSE GSIGSLESKL EILKAERRED CHVSYDSSQT  120
ESPVLFRKCD GIESSSKETS KDGLSAGSFT QDTKTNWTPE CRVATAMPAA EMEIKPEVSI  180
SPEENKVSSI WKLSESIFAG QVSSLKRRRG KRKRKDCSKD VKEGSVGESE FLGSADALFA  240
TRCKDNSTST SGQIARCSTV DDQSRGSSKD GAVDVRVIFD SIAENKCASV FHRRLDSQKR  300
GRYKKMILQH MDIDTIRSRI ASGSITTAKE IFRDLLLLAN NALVFYSKTT REYKSALLLR  360
DIVTKSLQQN LKNYITKTTI TFLSTTSPLL NPPVKPQSAR PGNGKLSGKV TKAGKLVAKT  420
PNTGKRPNNV HSPPSAESSA LKKKGSRSPL LAESLAMRKK SSHSFPSAES LATRKKGFGR  480
PRKTGQESTT QRFESLPKGR KRSRVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211LKRRRGKR
2206212RRRGKRK
3207215RRGKRKRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G036900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455997.10.0uncharacterized protein LOC7490802 isoform X1
TrEMBLA0A2K2APF90.0A0A2K2APF9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Representative plantOGRP829569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-34DNA-binding bromodomain-containing protein