PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G062400.1
Common NamePOPTR_0004s06100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BES1
Protein Properties Length: 332aa    MW: 35574.6 Da    PI: 8.4785
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G062400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822217.92.4e-6721471150
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         ++++r+ptwkErEnnkrRERrRRaiaakiy+GLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp e+++++g sasasp+
  Potri.004G062400.1   2 TSGTRMPTWKERENNKRRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCKEAGWTVEEDGTTYRKGCKPVERMDIMGGSASASPC 92 
                         5899*************************************************************************************** PP

              DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvsssl 150
                         ss++        +sp++sy++sp+sssfpsp+s+  + +a+     +sl+p+l++ls+ sss+
  Potri.004G062400.1  93 SSYH--------RSPCASYNPSPASSSFPSPVSSHYAANANGnadpNSLIPWLKNLSSGSSSA 147
                         ****........*******************998877766556788**********9977764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.0E-683141IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTSGTRMPTW KERENNKRRE RRRRAIAAKI YSGLRMYGNY KLPKHCDNNE VLKALCKEAG  60
WTVEEDGTTY RKGCKPVERM DIMGGSASAS PCSSYHRSPC ASYNPSPASS SFPSPVSSHY  120
AANANGNADP NSLIPWLKNL SSGSSSASPK HPHHLFIHTG SISAPVTPPL SSPTARTPRT  180
KNDWDDAAAG QSWMGQNYSF MPSSMPSSTP PSPGRHVLPD SGWLAGIQIP QSGPSSPTFS  240
LVSRNPFGFR EEALSGAGSR MWTPGQSGTC SPAIPAGIDQ TADVPMSDSM AAEFAFGSNA  300
AGLVKPWEGE RIHEECVSDD LELTLGNSNT R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G062400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8236050.0EU823605.1 Populus tremula isolate swl195-43 brassinosteroid signaling positive regulator-related protein gene, partial cds.
GenBankEU8236070.0EU823607.1 Populus tremula isolate swl195-54 brassinosteroid signaling positive regulator-related protein gene, partial cds.
GenBankEU8236090.0EU823609.1 Populus tremula isolate swl195-63 brassinosteroid signaling positive regulator-related protein gene, partial cds.
GenBankEU8236130.0EU823613.1 Populus tremula isolate swl195-76 brassinosteroid signaling positive regulator-related protein gene, partial cds.
GenBankEU8236190.0EU823619.1 Populus tremula isolate swl195-95 brassinosteroid signaling positive regulator-related protein gene, partial cds.
GenBankEU8236220.0EU823622.1 Populus tremula isolate swl195-114 brassinosteroid signaling positive regulator-related protein gene, partial cds.
GenBankEU8236230.0EU823623.1 Populus tremula isolate swl195-114 brassinosteroid signaling positive regulator-related protein gene, partial cds.
GenBankEU8236260.0EU823626.1 Populus tremula isolate swl195-32E brassinosteroid signaling positive regulator-related protein gene, partial cds.
GenBankEU8236270.0EU823627.1 Populus tremula isolate swl195-32E brassinosteroid signaling positive regulator-related protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305719.10.0BES1/BZR1 homolog protein 4 isoform X1
RefseqXP_024455047.10.0BES1/BZR1 homolog protein 4 isoform X2
SwissprotQ9ZV881e-136BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLB9H2D70.0B9H2D7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s06100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26613375
Representative plantOGRP15951542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-117BES1/BZR1 homolog 4