PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G064300.2
Common NamePOPTR_0004s06300g, PTAG1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27559.1 Da    PI: 9.7797
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G064300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF983.9e-312474151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Potri.004G064300.2 24 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74
                        79***********************************************95 PP
2K-box115.35.9e-38921885100
               K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         s++  ++ea+a+++qqe+akL+++i nLq+++Rh+lGe L+sLs+keL++Le +Lek++++iRskKnell+++ie++qk+e +l+++n+ L
  Potri.004G064300.2  92 SNTGsVSEANAQYYQQEAAKLRSQIGNLQNSNRHMLGEALSSLSVKELKSLEIRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLL 182
                         344459************************************************************************************* PP

               K-box  95 rkklee 100
                         r+k+ e
  Potri.004G064300.2 183 RAKISE 188
                         ***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.2631676IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-331790IPR002100Transcription factor, MADS-box
CDDcd002651.40E-431793No hitNo description
PRINTSPR004041.6E-321838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003192.5E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-323853IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-325374IPR002100Transcription factor, MADS-box
PfamPF014861.4E-28100186IPR002487Transcription factor, K-box
PROSITE profilePS5129715.32102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEYQNESLES SPLRKLGRGK VEIKRIENTT NRQVTFCKRR SGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYSNDSVKST IERYKKASAD SSNTGSVSEA NAQYYQQEAA KLRSQIGNLQ  120
NSNRHMLGEA LSSLSVKELK SLEIRLEKGI SRIRSKKNEL LFAEIEYMQK REVDLHNNNQ  180
LLRAKISENE RKRQSMNLMP GGADFEIVQS QPYDSRNYSQ VNGLQPASHY SHQDQMALQL  240
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-201688173Myocyte-specific enhancer factor 2B
1tqe_Q3e-201688173Myocyte-specific enhancer factor 2B
1tqe_R3e-201688173Myocyte-specific enhancer factor 2B
1tqe_S3e-201688173Myocyte-specific enhancer factor 2B
5f28_A4e-201684169MEF2C
5f28_B4e-201684169MEF2C
5f28_C4e-201684169MEF2C
5f28_D4e-201684169MEF2C
6c9l_A3e-201688173Myocyte-specific enhancer factor 2B
6c9l_B3e-201688173Myocyte-specific enhancer factor 2B
6c9l_C3e-201688173Myocyte-specific enhancer factor 2B
6c9l_D3e-201688173Myocyte-specific enhancer factor 2B
6c9l_E3e-201688173Myocyte-specific enhancer factor 2B
6c9l_F3e-201688173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.124500.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G064300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7143860.0JQ714386.1 Populus simonii x Populus nigra isolate A flowering locus C (FLC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455023.11e-176floral homeotic protein AGAMOUS
RefseqXP_024455024.11e-176floral homeotic protein AGAMOUS
RefseqXP_024455025.11e-176floral homeotic protein AGAMOUS
SwissprotQ408721e-133AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLI0BW921e-175I0BW92_9ROSI; Flowering locus C
TrEMBLO651111e-175O65111_POPTR; AGAMOUS homolog
STRINGEOY278721e-151(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-110MIKC_MADS family protein
Publications ? help Back to Top
  1. Brunner AM, et al.
    Structure and expression of duplicate AGAMOUS orthologues in poplar.
    Plant Mol. Biol., 2000. 44(5): p. 619-34
    [PMID:11198423]