PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G070500.2
Common NamePOPTR_0004s07000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 460aa    MW: 53203.1 Da    PI: 7.1715
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G070500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1724.8e-5383134319
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          L++cA+a+++gdl+ a++l + ++ l++ +  + +++++ yf+eALa+r+++     ++  +p +        + +  k+ +e sP+  f
  Potri.004G070500.2   8 KLMDCAKAIADGDLKFADQLFSDMEALSAAETnRVTKKVVDYFAEALARRVHG-----VHPRNPFP-----LLPSSNLKKISYEPSPLEWF 88 
                         79*************************55555399******************.....33333333.....334445566779******** PP

                GRAS  94 shltaNqaIleavege.ervHiiDfd.isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         + + +  aI + ++ + +++H i ++ +  + Q  +L + L    +g p s++ T + ++ s++ + l+e ++ ++++A++  v+f++++l
  Potri.004G070500.2  89 ACMSTDYAIRDVLNVKkNKLHLIEISsLVDCWQRHSLEEYLLHGHHGMPlSFQYTSIRPKLSKNDDYLQENRRMITEVAQRSPVDFKYRAL 179
                         *************9886999*****73679***********998877777*********9999**************************** PP

                GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          a+++ d+  + Lr+++   +E ++V +v+qlh+ll    +le + d+vL+ +k+l+P+++v+veqead n+ +F+ rf+++++yy  lf+
  Potri.004G070500.2 180 FADSVPDIVESVLRLERtseDEIIIVRWVFQLHKLL----ALEGAVDKVLSKLKDLKPDIMVIVEQEADNNTDDFFYRFASSFKYYLNLFE 266
                         ********999998877778***************9....55555666******************************************* PP

                GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319
                         sle    +++      Er+ l+++i+nvva eg +r+erhetl++W++rl
  Potri.004G070500.2 267 SLELY--ATNLSSLIWERH-LRWQICNVVASEGIDRIERHETLARWQQRL 313
                         **998..689999999*99.****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.7661348IPR005202Transcription factor GRAS
PfamPF035141.6E-508313IPR005202Transcription factor GRAS
SuperFamilySSF540011.43E-15351442No hitNo description
PfamPF029027.0E-9351440IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGSPLVIKLM DCAKAIADGD LKFADQLFSD MEALSAAETN RVTKKVVDYF AEALARRVHG  60
VHPRNPFPLL PSSNLKKISY EPSPLEWFAC MSTDYAIRDV LNVKKNKLHL IEISSLVDCW  120
QRHSLEEYLL HGHHGMPLSF QYTSIRPKLS KNDDYLQENR RMITEVAQRS PVDFKYRALF  180
ADSVPDIVES VLRLERTSED EIIIVRWVFQ LHKLLALEGA VDKVLSKLKD LKPDIMVIVE  240
QEADNNTDDF FYRFASSFKY YLNLFESLEL YATNLSSLIW ERHLRWQICN VVASEGIDRI  300
ERHETLARWQ QRLYAYKIEE NSGFPVLLAA GHPLIFASVW KPANATHSSG DSLNSPPDAH  360
HTEKTTISEW LEKHLLPVLG YRNSQQLKLK QLNIPYQTNR IDCGIFVMKY ADCLAHCDHF  420
PFTQEDMPHF RLRVFLDIYR GRLPVPPSHV RFLRALYNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-16932791424Protein SHORT-ROOT
5b3h_B1e-16932737370Protein SHORT-ROOT
5b3h_E1e-16932737370Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G070500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1483371e-168EF148337.1 Populus trichocarpa x Populus deltoides clone WS01313_H03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455247.10.0DELLA protein GAIP isoform X1
TrEMBLA0A2K2AR240.0A0A2K2AR24_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.19e-52GRAS family protein