PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G070500.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 707aa    MW: 82059.9 Da    PI: 7.0339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G070500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS165.54.3e-51733332374
                GRAS  32 spdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfd.is 120
                         +++ + +++++ yf+eALa+r+++     ++  +p +        + +  k+ +e sP+  f+ + +  aI + ++ + +++H i ++ + 
  Potri.004G070500.3   7 AETNRVTKKVVDYFAEALARRVHG-----VHPRNPFP-----LLPSSNLKKISYEPSPLEWFACMSTDYAIRDVLNVKkNKLHLIEISsLV 87 
                         55567899****************.....33333333.....334445566779*********************9886999*****7367 PP

                GRAS 121 qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlv 207
                          + Q  +L + L    +g p s++ T + ++ s++ + l+e ++ ++++A++  v+f++++l a+++ d+  + Lr+++   +E ++V +v
  Potri.004G070500.3  88 DCWQRHSLEEYLLHGHHGMPlSFQYTSIRPKLSKNDDYLQENRRMITEVAQRSPVDFKYRALFADSVPDIVESVLRLERtseDEIIIVRWV 178
                         9***********998877777*********9999************************************999998877778********* PP

                GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                         +qlh+ll    +le + d+vL+ +k+l+P+++v+veqead n+ +F+ rf+++++yy  lf+sle    +++      Er+ l+++i+nvv
  Potri.004G070500.3 179 FQLHKLL----ALEGAVDKVLSKLKDLKPDIMVIVEQEADNNTDDFFYRFASSFKYYLNLFESLELY--ATNLSSLIWERH-LRWQICNVV 262
                         ******9....55555666*********************************************998..689999999*99.********* PP

                GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         a eg +r+erhetl++W++rl  a F +v+l ++  ++    l  ++   y++ee+sg  vl   ++pL+++S+W+
  Potri.004G070500.3 263 ASEGIDRIERHETLARWQQRLYGARFCSVSLCSDHFADF---LYDFS--AYKIEENSGFPVLLAAGHPLIFASVWK 333
                         *******************************99988775...44444..699***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.1531318IPR005202Transcription factor GRAS
PfamPF035141.5E-487333IPR005202Transcription factor GRAS
PROSITE profilePS5060014.343453661IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540017.65E-30477522No hitNo description
SuperFamilySSF540017.65E-30551688No hitNo description
Gene3DG3DSA:3.30.310.1303.6E-13563656No hitNo description
PfamPF029023.4E-19569687IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MEALSAAETN RVTKKVVDYF AEALARRVHG VHPRNPFPLL PSSNLKKISY EPSPLEWFAC  60
MSTDYAIRDV LNVKKNKLHL IEISSLVDCW QRHSLEEYLL HGHHGMPLSF QYTSIRPKLS  120
KNDDYLQENR RMITEVAQRS PVDFKYRALF ADSVPDIVES VLRLERTSED EIIIVRWVFQ  180
LHKLLALEGA VDKVLSKLKD LKPDIMVIVE QEADNNTDDF FYRFASSFKY YLNLFESLEL  240
YATNLSSLIW ERHLRWQICN VVASEGIDRI ERHETLARWQ QRLYGARFCS VSLCSDHFAD  300
FLYDFSAYKI EENSGFPVLL AAGHPLIFAS VWKPANATHS SGENIGNSDD TMRGTDLNHP  360
ITILEESTSP VVEPEAVSSS EFTEPEVVSS SESDDDNEYV YNRIRRSMHG KIWSVQEVRE  420
YLVSPFTEKE SKRLSRWKSR KLTRNVAGRD KQLNVPDTSL ASLLRIPPSS TPICEEKQYY  480
VDDSVINAFF DLLKKRQEKF PDWYKRNSSL PTWTMVRKIK TWPSFASLYS LSLTCVQCHG  540
QIYKTFLLSG KWTMTKLLSC INIEEIAGTA KLFIPLCLEN HWILICVDME KREFLWLDSL  600
NSPPDAHHTE KTTISEWLEK HLLPVLGYRN SQQLKLKQLN IPYQTNRIDC GIFVMKYADC  660
LAHCDHFPFT QEDMPHFRLR VFLDIYRGRL PVPPSHVRFL RALYNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-1514334125474Protein SHORT-ROOT
5b3h_B9e-161433471420Protein SHORT-ROOT
5b3h_E9e-161433471420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G070500.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1483370.0EF148337.1 Populus trichocarpa x Populus deltoides clone WS01313_H03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455247.10.0DELLA protein GAIP isoform X1
TrEMBLA0A2K2AR240.0A0A2K2AR24_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-49GRAS family protein