PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G070500.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 677aa    MW: 78079.2 Da    PI: 6.6759
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G070500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS187.77.8e-5883634374
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          L++cA+a+++gdl+ a++l + ++ l++ +  + +++++ yf+eALa+r+++     ++  +p +        + +  k+ +e sP+  f
  Potri.004G070500.4   8 KLMDCAKAIADGDLKFADQLFSDMEALSAAETnRVTKKVVDYFAEALARRVHG-----VHPRNPFP-----LLPSSNLKKISYEPSPLEWF 88 
                         79*************************55555399******************.....33333333.....334445566779******** PP

                GRAS  94 shltaNqaIleavege.ervHiiDfd.isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         + + +  aI + ++ + +++H i ++ +  + Q  +L + L    +g p s++ T + ++ s++ + l+e ++ ++++A++  v+f++++l
  Potri.004G070500.4  89 ACMSTDYAIRDVLNVKkNKLHLIEISsLVDCWQRHSLEEYLLHGHHGMPlSFQYTSIRPKLSKNDDYLQENRRMITEVAQRSPVDFKYRAL 179
                         *************9886999*****73679***********998877777*********9999**************************** PP

                GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          a+++ d+  + Lr+++   +E ++V +v+qlh+ll    +le + d+vL+ +k+l+P+++v+veqead n+ +F+ rf+++++yy  lf+
  Potri.004G070500.4 180 FADSVPDIVESVLRLERtseDEIIIVRWVFQLHKLL----ALEGAVDKVLSKLKDLKPDIMVIVEQEADNNTDDFFYRFASSFKYYLNLFE 266
                         ********999998877778***************9....55555666******************************************* PP

                GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                         sle    +++      Er+ l+++i+nvva eg +r+erhetl++W++rl  a F +v+l ++  ++    l  ++   y++ee+sg  vl
  Potri.004G070500.4 267 SLELY--ATNLSSLIWERH-LRWQICNVVASEGIDRIERHETLARWQQRLYGARFCSVSLCSDHFADF---LYDFS--AYKIEENSGFPVL 349
                         **998..689999999*99.****************************************99988775...44444..699********** PP

                GRAS 361 gWkdrpLvsvSaWr 374
                            ++pL+++S+W+
  Potri.004G070500.4 350 LAAGHPLIFASVWK 363
                         *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.6231348IPR005202Transcription factor GRAS
PfamPF035142.7E-558363IPR005202Transcription factor GRAS
PROSITE profilePS506009.683483676IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540019.42E-13506544No hitNo description
SuperFamilySSF540019.42E-13589675No hitNo description
Gene3DG3DSA:3.30.310.1301.0E-7593650No hitNo description
PfamPF029029.5E-7599650IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MGSPLVIKLM DCAKAIADGD LKFADQLFSD MEALSAAETN RVTKKVVDYF AEALARRVHG  60
VHPRNPFPLL PSSNLKKISY EPSPLEWFAC MSTDYAIRDV LNVKKNKLHL IEISSLVDCW  120
QRHSLEEYLL HGHHGMPLSF QYTSIRPKLS KNDDYLQENR RMITEVAQRS PVDFKYRALF  180
ADSVPDIVES VLRLERTSED EIIIVRWVFQ LHKLLALEGA VDKVLSKLKD LKPDIMVIVE  240
QEADNNTDDF FYRFASSFKY YLNLFESLEL YATNLSSLIW ERHLRWQICN VVASEGIDRI  300
ERHETLARWQ QRLYGARFCS VSLCSDHFAD FLYDFSAYKI EENSGFPVLL AAGHPLIFAS  360
VWKPANATHS SGENIGNSDD TMRGTDLNHP ITILEESTSP VVEPEAVSSS EFTEPEVVSS  420
SESDDDNEYV YNRIRRSMHG KIWSVQEVRE YLVSPFTEKE SKRLSRWKSR KLTRNVAGRD  480
KQLNVPDTSL ASLLRIPPSS TPICEEKQYY VDDSVINAFF DLLKKRQEKF PDWYKRNSSL  540
PTWTMVRKIK TWPSFASLYS LSLTCVQCHG QIYKTFLLSG KWTMTKLLSC INIEEIAGTA  600
KLFIPLCLEN HWILICVDME KREFLWLDSL NSPPDAHHTE KTTISEWLEK HLLPVLGYRN  660
SQQLKLKQLN IPYQTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-18936491474Protein SHORT-ROOT
5b3h_B1e-18936437420Protein SHORT-ROOT
5b3h_E1e-18936437420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G070500.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1483371e-178EF148337.1 Populus trichocarpa x Populus deltoides clone WS01313_H03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455247.10.0DELLA protein GAIP isoform X1
TrEMBLA0A2K2AR240.0A0A2K2AR24_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-54GRAS family protein