PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G071600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 737aa    MW: 85366.8 Da    PI: 6.9025
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G071600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS179.52.5e-5573624374
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          L++cA+a+++gdl+ a++l + ++ l++ +  + +++++ yf+eALa+r+++     ++  +p +        + +  k+ +e sP+  f
  Potri.004G071600.1   7 KLMDCAKAIADGDLKFADQLFSDMEALSAAETnRVTKKVVEYFAEALARRVHG-----VHPRNPVP-----LLPSSNLKKISYEPSPLEWF 87 
                         79*************************55555399******************.....33333333.....344445566789******** PP

                GRAS  94 shltaNqaIleavege.ervHiiDfdis.qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         + + +  aI + ++ + +++H i ++      Q  +L + L    +g p s++ T   ++ s++ + l+e ++ ++++ +++ v+f++++l
  Potri.004G071600.1  88 ACMSTDYAIRDVLNVKkNKLHLIEISSLvDFWQRRSLEEFLLHGHHGMPlSFQYTSSRPKLSKNDDYLQENRRMITEVVQRFPVDFKYRAL 178
                         *************9886999*****8651567888888888877777777*********9999**************************** PP

                GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          a+++ d+  + Lr+++   +E ++V +v+qlh+ll    +le + d+vL+ +k+l+P+++v+veqead n+ +F+ rf+++++yy +lf+
  Potri.004G071600.1 179 FADSVPDIVESVLRLERtseDEIIIVRWVFQLHKLL----ALEGAVDKVLSKLKDLKPDIMVIVEQEADNNTDDFFYRFASSFKYYLSLFE 265
                         ********999998877778***************9....55555666******************************************* PP

                GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                         sle    +++      Er+ l+++i+nvva eg er+erhetl++W++rl  a F +v+l ++  ++    l  ++   y++ee+sg  vl
  Potri.004G071600.1 266 SLELY--ATNLSSLIWERH-LRWQICNVVASEGIERIERHETLARWQQRLYGARFCSVSLCSNQFAD---FLYDFP--AYKIEENSGFPVL 348
                         **998..689999999*99.****************************************9876655...566666..7************ PP

                GRAS 361 gWkdrpLvsvSaWr 374
                            ++pL+++S+W+
  Potri.004G071600.1 349 LAAGHPLIFASVWK 362
                         *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.4121347IPR005202Transcription factor GRAS
PfamPF035148.5E-537362IPR005202Transcription factor GRAS
PROSITE profilePS5060014.331482691IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540015.23E-29507551No hitNo description
SuperFamilySSF540015.23E-29583718No hitNo description
Gene3DG3DSA:3.30.310.1301.5E-12592686No hitNo description
PfamPF029021.3E-19594717IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MDPLVIKLMD CAKAIADGDL KFADQLFSDM EALSAAETNR VTKKVVEYFA EALARRVHGV  60
HPRNPVPLLP SSNLKKISYE PSPLEWFACM STDYAIRDVL NVKKNKLHLI EISSLVDFWQ  120
RRSLEEFLLH GHHGMPLSFQ YTSSRPKLSK NDDYLQENRR MITEVVQRFP VDFKYRALFA  180
DSVPDIVESV LRLERTSEDE IIIVRWVFQL HKLLALEGAV DKVLSKLKDL KPDIMVIVEQ  240
EADNNTDDFF YRFASSFKYY LSLFESLELY ATNLSSLIWE RHLRWQICNV VASEGIERIE  300
RHETLARWQQ RLYGARFCSV SLCSNQFADF LYDFPAYKIE ENSGFPVLLA AGHPLIFASV  360
WKPANAAHFS GENIGNTDDT MRGTDLNHPI TIQEESTSPV VEPEAVSSSE FAEPEVVSSS  420
ESDDDNEYVY NRIRGLTHGK IWSVEEVREY LVSPFTEKES KRLSRWKSRQ LTRNVAGRDK  480
QLNVPDTSLA SLLRIPPSST PIREEKQYYV DDSVINAFFD LLKKRQEKFP DWYRRNSSLP  540
TWTMVRKIKT WPSFASLYSL SLTCVQCHGQ IYKTFLLSGK WTMTKLLSCI NIEEIAGTSK  600
LFIPLCLENH WILICVDMEK RGLLWLDSLN SPPDAHHTEK ATISEWLVKH LLPVLGYRNS  660
QQWKFLQLKD IPYQTNRIDC GIFVMKYADC LAHCDHFPFT QQDMPHFRLR VFLDIYRGRL  720
PVPPSHVRFL RALYNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-15836391474Protein SHORT-ROOT
5b3h_B9e-16836337420Protein SHORT-ROOT
5b3h_E9e-16836337420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G071600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1483370.0EF148337.1 Populus trichocarpa x Populus deltoides clone WS01313_H03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454356.10.0DELLA protein GAIP isoform X1
TrEMBLA0A2I4KKT30.0A0A2I4KKT3_POPTR; GRAS family protein
STRINGPOPTR_0004s07000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2806323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.16e-47GRAS family protein